Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5480 113 4e-20 >seq5480 Length=41483 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139574 TCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||| || ||||| || ||| ||| ||||| ||||| |||||||| || || | Sbjct 2073 TCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAA 2014 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || ||||| ||||||||||| || || || || ||||| |||||| || | | | Sbjct 2013 ATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGGATTTTAGTCTTGACGTTT 1954 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||||| || |||||||| | || | ||||||||||| | || || ||| Sbjct 1953 TCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTTGCCGGTGAGGGTCTTGACG 1894 Query 139754 AATATTTGCATA 139765 |||||||||||| Sbjct 1893 AATATTTGCATA 1882 Score = 105 bits (116), Expect = 7e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 139541 CCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATT 139600 || || ||||| | || | ||| | || ||||| ||||||||||| || || | Sbjct 2802 CCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGG 2743 Query 139601 GTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 139660 |||| ||||||||||| || || || |||||| | ||||| ||||| || ||| Sbjct 2742 GTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATG 2683 Query 139661 CCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTC 139719 || || || || ||| | || | ||| | | ||| | |||||| | ||||||||||| Sbjct 2682 CCCTCCTTATCT-TGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 139720 AACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | |||||| ||||||| |||||| || || |||||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||| ||||| || |||| || |||||||||||||| Sbjct 2547 GTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTGTTTACCC 2488 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| || || || || || ||||| || ||||| ||| | || || || Sbjct 2487 GCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTC-TTGAATCTTCGTCTT 2429 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | |||||| | ||||| ||||| | || | || ||||| || | ||| Sbjct 2428 AACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAGTGAGCGT 2369 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| || |||||| Sbjct 2368 TTTGACGAAGATCTGCATA 2350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || || || || ||||||||||| Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || ||||| || ||| | |||| | |||||||| || || Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| |||||||| ||||||| |||| | ||| | || || | | || || Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACG 1098 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||| || ||||||||||| ||||| |||||||| Sbjct 1097 TCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCAT 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495854636188800