Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2599 351 1e-91 seq19961 154 2e-32 >seq2599 Length=48712 Score = 351 bits (388), Expect = 1e-91 Identities = 960/1460 (66%), Gaps = 28/1460 (2%) Strand=Plus/Minus Query 78738 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAA 78797 ||| || || || || | || ||||| || || || ||||| || ||| ||||| || Sbjct 37956 TGCAGGCTTTGTGCGCAAGTAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAA 37897 Query 78798 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 78857 ||||| || ||||| |||| | | || || || || | || | || || || Sbjct 37896 GTGCATTGATGTCAGTTTACTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCT 37837 Query 78858 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 78917 ||| ||||| || || || | || || ||||| || ||||| |||| || || || || Sbjct 37836 TTGGTCGATAAAAGCACCGCGATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTC 37777 Query 78918 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCC 78977 ||| | ||| |||| |||| | ||||||||||| || || || | || || Sbjct 37776 CCACACAGTGCGGTAAAGCAGCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACC 37717 Query 78978 ACCATCTGCCATAATCCTATTCTTGA----TCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 | |||| || ||| | | || ||||| |||| ||| || || | Sbjct 37716 GTTGTAGGCCA----CCAGTTCGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGA 37661 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | || |||| | ||| | || ||||| ||||| || || ||||| |||| |||| | Sbjct 37660 GATCTTTAAGCAAATGGTGGTTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCAT 37601 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 | | |||||| || || | || | ||||||||||| || | || || || || |||| Sbjct 37600 ATACATTACTTGTGTACGCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATG 37541 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTT 79213 |||| ||||| || |||| | | ||| || | | |||| | | ||||| ||| Sbjct 37540 CCGTGGGCATGGGAGCCAATAGAAGACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTT 37481 Query 79214 TTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAA 79273 | || | ||||| ||||||||| || ||| ||| ||| | |||||| || | | Sbjct 37480 TAAGTGCGTCCCAGTCCCAAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATA 37421 Query 79274 TACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATT 79333 |||| ||| | || || ||||| || || | ||||| || |||| || Sbjct 37420 TACCCTTAGAGACAGGCGAGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTT 37361 Query 79334 CACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 79393 |||| || || ||||| || ||||| ||||| ||||| || ||||| || || || || Sbjct 37360 CACAGCTTGCTTCTAACGCACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCA 37301 Query 79394 GTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 79453 |||||| ||||||| || || | | | ||||| || ||||| | ||||| | Sbjct 37300 TTGCTTCCGGGCTATCGAAAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTA 37241 Query 79454 CACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 79513 | |||||||| || || | ||| | || || | |||||||| || | || |||| Sbjct 37240 CGCCAATACCAATTGGACGATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAAT 37181 Query 79514 AATTAATATCTATAATTTTATTGA-GATTCCTGACTATTACTTTGACCACATCCTTTAGT 79572 | ||| ||| |||||||| || | | ||| || | | | ||| ||| || |||| | Sbjct 37180 AGGTAACATCAATAATTTTGTTAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAAT 37122 Query 79573 TTGAGAAAATCAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTA 79632 || | || || | || || | |||||| || | ||| | ||| || |||||| Sbjct 37121 TTTTGGAAGTCGTAATAACCCTCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTA 37062 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 || || || | |||| | | || || | || | ||| || || | ||| |||| Sbjct 37061 CAGACTGCAATTTCATCGGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACAC 37002 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 ||||| ||||| | ||||||||||| ||||| |||||| |||||||| || || || Sbjct 37001 TTAATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATA 36942 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAG---- 79807 |||| || |||||||||||||| || | ||| || | ||| | | || ||| Sbjct 36941 TACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGG 36883 Query 79808 --CCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAA 79865 ||| | || | || | ||| ||||||||| | || || || || Sbjct 36882 CACCTGTCGTAAA------TAGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAA 36829 Query 79866 CTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACC-ACT 79924 ||| |||||||| ||| ||| |||||||| || |||||||| | |||| ||| Sbjct 36828 CTCTTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACT 36769 Query 79925 CTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 79983 | ||| ||| |||| |||||| ||||||||||||||||| || ||| || ||| Sbjct 36768 GT-CATTATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGA 36711 Query 79984 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 80043 || | | | ||| || ||| | || ||||| ||| || |||||||| | | ||| Sbjct 36710 TCACGCGCACGATGTTCTTCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATG 36651 Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 || ||||| || |||| || || || | | || || | ||| ||||| ||||| Sbjct 36650 TCTCCGTGCCATGGCTCCAGATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGG 36591 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | || | || || ||||| || || | | ||| || | |||||||| || || Sbjct 36590 TCAACATACCGGGCAGTATTATTGTATACGCGTAGCATGGGTACGATACCATTCGAAGTT 36531 Query 80164 CCATTGGTCCCGGAGATATA 80183 ||||| || || | ||||| Sbjct 36530 CCATTTGTACCAGCTATATA 36511 >seq19961 Length=25414 Score = 154 bits (170), Expect = 2e-32 Identities = 436/666 (65%), Gaps = 13/666 (2%) Strand=Plus/Minus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || || || ||||| || ||||| || |||||||| ||||||| || || | Sbjct 14864 TTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTG 14805 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||||||||| || ||||| || | | ||| | | | | | || || Sbjct 14804 CTCCATGAAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAG 14745 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||| || ||||| || || || ||||| | || || ||||| || | | Sbjct 14744 CAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCAT 14685 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 ||| || |||||| | || || || || ||||| || | ||||||||| | ||||| Sbjct 14684 GGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Query 49908 AGATCTAACGGTTTCT----TCACTCGG-TGGATGCAATAAATGTTTAAACATCAAACAT 49962 || || |||| | ||||| | | || | | ||| ||||||||| || Sbjct 14624 ----CTGGTGGATTCTCTCCTGGCTCGGCTTGTTG-ACCAGATGCCAAAACATCAAGCAG 14570 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 ||||| || |||| ||||| || | || || ||||| | ||||| ||| Sbjct 14569 GCGAACTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCG 14510 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 || | || || || || || | ||| || || || || || | || |||||||| Sbjct 14509 GGTAGGAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATG 14450 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT---ATC 50139 || || || || || || || || | | ||| || || ||||| ||| | ||| Sbjct 14449 CCCTCGACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATC 14390 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || | ||||| |||||||||||||| | || |||||||| || ||||| || ||| Sbjct 14389 CAGGCAAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAG 14330 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 || | || || | ||| | | || || | || || ||| |||||||||| Sbjct 14329 AGGTGGTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCC 14270 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 ||||||||||| || || |||||||| |||||||| || | ||||| || | |||| Sbjct 14269 GAATGAATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGC 14210 Query 50320 ACTTCT 50325 || ||| Sbjct 14209 ACGTCT 14204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717965654652960