Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2599 361 7e-95 seq19961 122 1e-22 >seq2599 Length=48712 Score = 361 bits (400), Expect = 7e-95 Identities = 987/1501 (66%), Gaps = 26/1501 (2%) Strand=Plus/Minus Query 70779 TTTTATTTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTA 70837 ||| |||||| | |||||| |||||||| || | | ||| |||||| || || | Sbjct 37998 TTTCATTTTTGTCCTGTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTT-GTGCGCA 37940 Query 70838 GATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTT 70897 || ||||||||||| || ||||| || ||| |||||||| ||||| || |||| Sbjct 37939 AGTAATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTT 37880 Query 70898 TGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTC 70957 | ||| | | || || ||||||| || | |||||| ||||| ||||| || || | Sbjct 37879 TACTATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCAC 37820 Query 70958 CCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA 71017 | | || || ||||| || ||||| |||| || || || ||||| | ||| |||| Sbjct 37819 CGCGATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAA 37760 Query 71018 CTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCC 71077 |||| | ||||||||||| || || || | || || | || | | Sbjct 37759 GCAGCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCACCAGTT 37700 Query 71078 TATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 71137 || ||| ||||| |||| ||| || || | | || |||| | ||| | | Sbjct 37699 CGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGT 37640 Query 71138 TAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTT 71197 | ||||| ||||| || || ||||| |||| |||| || | |||||| || |||| | Sbjct 37639 TCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCT 37580 Query 71198 CCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 71257 | | || |||||||| || | || || || || ||||| || ||||| || |||| | Sbjct 37579 CAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATA 37520 Query 71258 ATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAA 71317 ||||| || | | || ||| | ||||| |||| || | ||||| | ||||| Sbjct 37519 GAAGACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAA 37460 Query 71318 GATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATC 71377 || | || || || || ||| | || | Sbjct 37459 GAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGC 37400 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 | ||||||| ||||||| ||||| || ||||||||||| || || ||||| || | Sbjct 37399 CAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCAC 37340 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATG 71497 | || ||||| ||||| || ||||| || || || || ||||||||||||||| || | Sbjct 37339 CGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAG 37280 Query 71498 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGT 71557 | | | | ||||| || ||||| | ||||| ||||||||||| || || | | Sbjct 37279 GTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGAT 37220 Query 71558 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | | || || | |||||||| || | || ||||| ||| ||| |||||||| | Sbjct 37219 GACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGT 37160 Query 71618 TGAGATTTC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCTCCC 71675 | || |||| || | | | ||| ||| || |||| ||| | || || ||| ||| Sbjct 37159 TAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCC 37101 Query 71676 ATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || | |||||| || | || | ||| || |||||||| || || | |||| | Sbjct 37100 TCCT-TGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGG 37042 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | || | |||| ||| || || | |||| |||||| || ||||| | ||||| Sbjct 37041 AGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTG 36982 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 |||||| ||||| |||||| |||||||| || || ||| |||| || ||||||||||| Sbjct 36981 TTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAAT 36922 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTC-GAG------CCTTTATTATATTCTTGT 71908 ||| || | ||| || | ||| | | || ||| ||| | || | | Sbjct 36921 CTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCGTAAA------T 36869 Query 71909 ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTG 71967 | | ||| ||||||||| | || || || ||||| ||||||| |||| | | Sbjct 36868 AGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCC-AGCAGTCG 36810 Query 71968 TCTAATCCAGGACATTCATTCGGACACATCAATGACC-ACTCTCCATCATCATTTACTCG 72026 ||| |||||||| || |||||||| | ||||| ||| | ||| ||| |||| Sbjct 36809 CTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGT-CATTATCGGCGACTCT 36751 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCT 72085 |||||| ||||||||||||||||| || ||| || ||||| | | | ||| || | Sbjct 36750 ACGCATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTT 36692 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 || | || ||||| ||| || |||||||| | | ||| || ||||| || |||| Sbjct 36691 CGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCA 36632 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 || || || | | || |||| ||| ||||| ||||| || | || | || || | Sbjct 36631 GATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTAT 36572 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 |||| || || | | ||| || | |||||||| || | ||||| || || | |||| Sbjct 36571 TATTGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATAT 36512 Query 72266 A 72266 | Sbjct 36511 A 36511 >seq19961 Length=25414 Score = 122 bits (134), Expect = 1e-22 Identities = 424/661 (64%), Gaps = 3/661 (0%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || || || ||||| || ||||| || ||||| || ||||||| || || | Sbjct 14864 TTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTG 14805 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||||||||| || ||||| || | | ||| | | | | | || || Sbjct 14804 CTCCATGAAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAG 14745 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 || ||| || | || || || || ||||| | || || ||||| || | | Sbjct 14744 CAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCAT 14685 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 ||| || |||||| | || || || || ||||| |||| ||||| || | ||||| Sbjct 14684 GGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 | | | || | ||||| | | | ||| ||||||||| || ||||| Sbjct 14624 CTGGTGGATTCTCTCCTGGCTCGGCTTGTTGACCAGATGCCAAAACATCAAGCAGGCGAA 14565 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 || |||| |||||||| | || | ||||| | ||||| ||||| | Sbjct 14564 CTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCGGGTAG 14505 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 || || || || || | ||| || || || || || | ||| |||||||| || || Sbjct 14504 GAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATGCCCTC 14445 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTT 42249 || ||||| || || | | | ||| || || ||| ||| | ||||| Sbjct 14444 GACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATCCAGGC 14385 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| |||||||||||||| | || |||||||| || ||||| || ||||| | Sbjct 14384 AAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAGAGGTG 14325 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 || || | ||| | | || || | || || ||| ||||||||| ||||| Sbjct 14324 GTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCCGAATG 14265 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||| || || |||||||| |||||||| || | ||||| || ||||| || || Sbjct 14264 AATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGCACGTC 14205 Query 42430 T 42430 | Sbjct 14204 T 14204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670855945700640