Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq19961 188 1e-42 seq2599 127 3e-24 seq2939 109 8e-19 >seq19961 Length=25414 Score = 188 bits (208), Expect = 1e-42 Identities = 468/691 (68%), Gaps = 27/691 (4%) Strand=Plus/Plus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||| ||||| || || |||||||| |||||| | || ||||||||||| ||| | || Sbjct 14229 TGCTTCTACGGGTTTCAGATCATGATGGAGAACATTCATTCGGAAATGTATTCT-CTCTT 14287 Query 125292 ATTGA-CATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCTTTAACGCAATCGA 125347 | | | || ||||| |||||| || || | ||| ||||| ||||| ||||| Sbjct 14288 ACTCAACACCTACATCACCGATCCCCAGGAGCGCGACCAC---CTCTTCAACGCCATCGA 14344 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| |||| | || || ||||| | |||| || ||||||| ||||| | Sbjct 14345 GACGATGCCATGCATCAAAAAGAAGGCCGACTGGGCCCTTGCCTGGATCGGGAACGACGA 14404 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 | | |||| ||| | | || || ||||| ||||| |||||||||||||| || Sbjct 14405 CGCCACCTACGGCGAGCGCGTCGTCGCGTTCGCGGCCGTCGAGGGCATCTTCTTCAGCGG 14464 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||| || | ||||| ||| | ||||| ||||||||| | ||||| || || |||| Sbjct 14465 AGCTTTCGCCTCGATCTTCTGGATGAAGAAACGCGGACTCCTACCCGGGCTCACCTACAG 14524 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 ||||||| | || || || || |||||| | || || || ||| | ||||| | Sbjct 14525 TAACGAGCTCATCTCACGCGATGAGGGCATGCATACGGAGTTCGCCTGCTTGATGTTTTG 14584 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGA 125647 ||||| ||| | || || |||| || || || || | | ||| | | || Sbjct 14585 ---GCATCTG-GTCAACA-AGCCGAGCCAG-GA-GAGAA--TCCACCAGATTATCAAGGA 14635 Query 125648 TGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCAT 125707 ||| || || ||||| ||||| || ||||| | || || || |||| | ||||| Sbjct 14636 TGCGGTAGCTATCGAACAGGAGTTCCTCACCGAGGCTCTGCCTGTTGCCATGCTCGGCAT 14695 Query 125708 GAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA-GT 125766 ||||||| | || ||| ||||||| ||||||||||| |||| || || ||| | Sbjct 14696 GAACTGCGATCTCATGAAGCAGTACATCGAGTTTGTGGCCGATCACCTGCTTAGCGATCT 14755 Query 125767 TGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 || | | ||| | | ||| || |||||||||| ||||||||| |||| ||| | Sbjct 14756 AGACT-GTGACAAATTATGGAACTCCGAGAATCCCTTCGATTTCATG--GAGCAAATCTC 14812 Query 125827 --TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CA-AACGCTACGGT 125882 | || || || || ||||| ||||||||| ||| | ||||| || || || ||| Sbjct 14813 CATGGAAGGCAAAACTAACTTCTTCGAGAAGCGTGTCGGGGAGTATCAGAAAGC--CGGC 14870 Query 125883 GTCGGTGTCAATTTGGAGGATAATGTGTTTA 125913 ||| | ||| |||||| | ||||||| Sbjct 14871 GTCATGGCCAAAAAGGAGGACCAAGTGTTTA 14901 >seq2599 Length=48712 Score = 127 bits (140), Expect = 3e-24 Identities = 315/474 (66%), Gaps = 8/474 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || |||||| ||||||| || | || | || |||| || ||||||| ||| Sbjct 36592 CAGGGGGGAAATAAAAGGCCAGGTGCGTTTGCTATTTATCTGGAGCCATGGCACGGAGAC 36651 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| || || |||| |||| ||||| | ||| | ||||| || || | || Sbjct 36652 ATTTTCGAATTCCTCGACCTGCGAAAAAATACCGGCATCGAAGAACATCGTGCGCGTGAT 36711 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || |||||||| ||| | || ||| |||| ||| | ||| ||| || | Sbjct 36712 CTCTTCTATGCACTTTGGATTCCTGATCTGTTTATGCGTAGAGTCGCCGATAATGACAGT 36771 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||| ||| |||||| || ||| | ||| |||||||| ||||||||| Sbjct 36772 TGGTCACTTATGTGTCCCAACTCGTGTCCTGGTTTAAGCGACTGCTGGGGAGAAGAGTTT 36831 Query 97116 GAGGCCAA---GTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 || ||| |||| ||||| || ||||| || | ||| || || Sbjct 36832 GA---CAAGTTGTACGAAAAATACGAAATGGAAGGCCGCTATTTACGACAGGTGCCCGCT 36888 Query 97173 CGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| ||| | || | || ||| || ||| | || ||||| || ||||| || || Sbjct 36889 CAGAAACTTTGGTATGCTATTCTTGATAGC-CAGATTGAAACTGGCACCCCGTATATGCT 36947 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | || || || ||||| |||| || | || || || ||| | || Sbjct 36948 CTACAAGGATGCATGTAACCGTAAGAGCAATCAACAAAACGTTGGAACGATTAAGTGTTC 37007 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 ||| | || || ||| || | |||||| | ||||| || || | ||||| || Sbjct 37008 TAATTTATGTACAGAAGTTATTGAGTACTCGTCTCCCGATGAAATTGCAGTCTG 37061 >seq2939 Length=42873 Score = 109 bits (120), Expect = 8e-19 Identities = 278/419 (66%), Gaps = 18/419 (4%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||||||||| || || || ||||| ||||||||| | |||| || | || | Sbjct 15048 GAGGGCGATCTCGGCCCCGTATACGGCTTCCAGTGGCGTCACTTCGGAGC------TGCA 15101 Query 70124 GACTGCGAGA------CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACA-ATCAT 70176 || |||| | | ||||| ||| |||||| ||||| ||| | | || || || Sbjct 15102 TACAGCGATATGCACGCCGACTACACGGATCAGGGCGTTGACCAAATT-ACCCAGATTAT 15160 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTA--ATGTGCTCATGGAATCCT 70234 ||||| |||| | ||||| || | | || | || |||| |||||| Sbjct 15161 CGACACGCTCAGGGTTAATCCGGATGACCGCCGCATTATTTTATCTGCT--TGGAATGTC 15218 Query 70235 GCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTAC 70294 | || ||| | | ||||| || |||||||| ||||| |||| ||||| ||| | Sbjct 15219 TCGGACTTGAAGAAGATGGCGCTTCCACCGTGCCACTGCCTGGCGCAGTTCTACGTTGCC 15278 Query 70295 GATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 | || | ||||| || | |||| || | ||||||||||||||||| ||||| || Sbjct 15279 AACGGTGAGTTGTCGTGTCAATTGTACCAACGCAGTGCCGACATGGGCCTAGGTGTGCCG 15338 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 || |||||||| || || || | ||||| || || |||||| ||| || || || Sbjct 15339 TTCAACATTGCCTCGTACGCTCTGCTCACGCATATCATCGCTCACTATACTGGTCTTAAG 15398 Query 70415 GCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | || || || || || | ||| ||| | || ||||| |||| ||| || |||| Sbjct 15399 CCTGGGGATTTTGTCCATACGACTGGTGACACACATGTGTACTTAACCCACGTCCAGCC 15457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740746435964640