Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5480 93.3 3e-14 >seq5480 Length=41483 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| || || || ||||| | | || | |||| || || ||||| || Sbjct 1247 GTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCG 1188 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGT-TT 18963 ||| |||| | |||||||||||| || | |||||||||||| ||||| ||| || Sbjct 1187 GCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATTTT-TGTCTT 1129 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAG 19022 ||| | ||| ||||| | || || || |||| |||||| || || || || || | Sbjct 1128 TACGTTTTCGATCGTATC-CGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACG 1070 Query 19023 TTTTGACAAAAATTTGCATTTT 19044 ||||||| || ||||||||||| Sbjct 1069 TTTTGACGAAGATTTGCATTTT 1048 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||| ||||| |||||||| | || || | ||||| Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||||||||| | || || | ||| || || || | |||||| ||||| Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTG 2441 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| ||| || || | | | || |||| ||||| |||| ||||||||||| Sbjct 2440 AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTT 2381 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||||| || || ||||| Sbjct 2380 GCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414402203811016