Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5480 143 6e-29 >seq5480 Length=41483 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || ||||| || || || || | ||||||||||||||||| || Sbjct 1247 GTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCG 1188 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | |||||| ||||| || || || || ||||| ||||| || |||| ||| Sbjct 1187 GCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATTTTTGTCTTT 1128 Query 104483 ACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || ||||| | ||||| | || ||| || || || ||||| ||||| ||||| | || Sbjct 1127 ACGTTTTCGATCGTATC-CGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACGT 1069 Query 104542 TTTTACAAATATCTGCATTTT 104562 ||| || || || |||||||| Sbjct 1068 TTTGACGAAGATTTGCATTTT 1048 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| || || | ||| ||| ||||||||||||||||| || || | |||||| Sbjct 1718 AGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCC 1659 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| |||||||| ||||| || | ||||||||| || || || || ||||| || Sbjct 1658 TCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCT 1599 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||||| ||| || ||||| | || || || || || || || || ||||| || Sbjct 1598 TGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTT 1539 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 1538 TTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || |||||||| || || || | ||||| || | ||| || || Sbjct 1475 GTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTGCTTGCCG 1416 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||||||||||||||| || || || || ||||| || |||| ||| Sbjct 1415 GCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTTTGTTTTC 1356 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || ||||| || || || || || || Sbjct 1355 ACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGTGAGGGTC 1296 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1295 TTCACGAAGATCTGCAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150900303612912