Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq25055 111 8e-20 seq18082 104 1e-17 seq10296 104 1e-17 seq11346 100 1e-16 >seq25055 Length=46323 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||| | | ||||||||||| |||||||||||||||||||||||||| Sbjct 24911 AAAATAAATATGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGC 24852 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||| ||||||||| ||||||| Sbjct 24851 TCTAACCGACTGAGCTAGTGGGCCG 24827 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 22710 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 22651 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| ||||||| Sbjct 22650 TGAGCTAGTGGGCCG 22636 Score = 105 bits (116), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| || ||||||| | | ||||||||||| |||||||||||||||||||||| Sbjct 25462 ATAAAAATACA---TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACG 25406 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||| ||||||||| |||||| Sbjct 25405 ACGCTCTAACCGACTGAGCTAGTGGGCC 25378 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||| Sbjct 23401 GGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCGACTGAGCTAGTGGG 23342 Query 11528 CC 11529 || Sbjct 23341 CC 23340 >seq18082 Length=14147 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 12713 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCTAC 12772 Query 11516 TGAGCTAATGGGCC 11529 ||||||| |||||| Sbjct 12773 TGAGCTAGTGGGCC 12786 >seq10296 Length=29879 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 10610 TGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCTAC 10669 Query 11516 TGAGCTAATGGGCC 11529 ||||||| |||||| Sbjct 10670 TGAGCTAGTGGGCC 10683 Score = 104 bits (114), Expect = 1e-17 Identities = 78/91 (86%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||| |||| | | |||||||| | | ||||||||||| ||||||||||||||||||| Sbjct 24108 TAATACAAAAGTTCATTTGGCCCACGCAGGGATCGAACCTACGACCTTCGCGTTATTAGC 24049 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||| ||||||||| | |||| Sbjct 24048 ACGACGCTCTAACCGACTGAGCTAGTAGGCC 24018 >seq11346 Length=9021 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 709 TGGCCCACGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 650 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 649 TGAGCTAGTAGGCC 636 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 1974 TGGCCCACGCAGGGATCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCGAC 1915 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 1914 TGAGCTAGTAGGCC 1901 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261383596698064