Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5480 93.3 4e-14 >seq5480 Length=41483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| |||||||| || | |||||| || | ||| ||||||| || Sbjct 1482 GTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTG 1423 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| ||||||| | || || ||||| ||||| || || || ||||| | ||||| Sbjct 1422 CTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTT 1363 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || || || ||| ||||||| | | |||||||| | || || ||||| || || Sbjct 1362 TGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGT 1303 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||| Sbjct 1302 GAGGGTCTTCACGAAGATCTGCAT 1279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||||||| | ||||| | | |||||||| || | ||| || || || Sbjct 3149 TCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAAATGCCCTCCTTA 3090 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| ||||||||| ||| ||||||| || || || | ||||||| Sbjct 3089 TCCTGAATTTTAGCCTTGACG--TTCGATGGTGTCAGACAACTCCACTTCGAGCGTGATG 3032 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| | || || |||| |||||| || ||||| Sbjct 3031 GTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCAT 2997 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||| | | ||| | ||||| || | || || ||||| || | Sbjct 2590 AAAAATTTGCATCCCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAAT 2531 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| ||||| || ||| |||||| |||||||| || | ||||| | | || Sbjct 2530 GTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTG 2471 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || || ||||| || || ||||| | ||| || | ||| || | | ||||| Sbjct 2470 TTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTC 2411 Query 94948 AGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || ||| || || || | ||| |||||||| ||||| || ||||| || |||||||||| Sbjct 2410 -GCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCA 2352 Query 95007 T 95007 | Sbjct 2351 T 2351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94789 CAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT 94848 ||| || | ||| | ||||| || || |||||||| | ||| || || | ||| Sbjct 2797 CAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCG 2738 Query 94849 GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTC 94908 | ||| || ||||| || || | ||||| || || ||||| || || || || || || Sbjct 2737 GCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTC 2678 Query 94909 TTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGT 94968 || || | ||| || ||||| ||| ||| ||||| | | || || || | || Sbjct 2677 CTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGT 2618 Query 94969 GATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||||||||| || ||||| Sbjct 2617 GATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448101998699040