Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2303 159 5e-35 seq21745 143 4e-30 seq17630 143 4e-30 seq8823 122 1e-23 seq30340 111 2e-20 seq19513 102 1e-17 >seq2303 Length=85521 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | |||||| || |||||||||||||| || ||||| ||||| Sbjct 58607 CGCTAAGCGTCACCGGAAGGTTCTTCGTGACAACATCCAAGGAATTACAAAGCCGGCTAT 58548 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||| |||||||| ||||||||| | ||||| || |||| || |||| Sbjct 58547 TCGTCGTCTAGCTCGGCGTGGTGGCGTCAAGCGTATTTCTGGTCTGATCTACGAGGAGAC 58488 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | || ||| | | || |||| |||||| || ||| ||||| Sbjct 58487 GCGAGGCGTGCTCAAAGTATTTCTCGAAAATGTCATCCGTGATGCCGTCACCTACACCGA 58428 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||| | ||||| ||||| | ||||| |||||||||| | || | || || Sbjct 58427 GCATGCTAAGAGGAAGACCGTCACTGCGATGGACGTCGTCTATGCCCTCAAGAGGCAGGG 58368 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 58367 ACGCACCCTATACGGATTCGGAGGTTAA 58340 >seq21745 Length=3349 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||||||||||||||| || ||||||||||| || || Sbjct 2059 CGCCAAGCGTCATCGAAAAGTTCTTCGAGATAACATCCAGGGTATCACCAAGCCGGCCAT 2118 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||| || || || ||| | || || || | || || |||| Sbjct 2119 TCGTCGTTTGGCGCGTCGTGGCGGTGTAAAACGTATTTCCGGTCTGATTTACGAGGAGAC 2178 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | || | || || ||| ||| |||| || ||| || ||| ||||| Sbjct 2179 CCGGGGTGTTCTCAAAGTGTTTCTTGAGAACGTCATCCGGGACGCTGTCACCTACACCGA 2238 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| | || || || |||| | || || Sbjct 2239 ACACGCCAAGAGAAAGACCGTCACTGCCATGGACGTTGTTTACGCTCTGAAGAGGCAGGG 2298 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | || ||||| || |||| Sbjct 2299 ACGCACCCTCTACGGTTTCGGTGGTTA 2325 >seq17630 Length=3584 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| ||||||||||| || ||||||||||| || || Sbjct 3068 CGCCAAGCGTCATCGAAAAGTTCTTCGGGATAACATCCAGGGTATCACCAAGCCGGCCAT 3127 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||| || || |||||| | || || || | || || |||| Sbjct 3128 TCGTCGTTTGGCGCGTCGTGGCGGTGTAAAGCGTATTTCCGGTCTGATTTACGAGGAGAC 3187 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || | || || ||| ||| |||| || ||| || ||| ||||| Sbjct 3188 CCGAGGAGTTCTCAAAGTGTTTCTTGAGAACGTCATCCGGGACGCTGTCACCTACACCGA 3247 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||| | ||||| ||||| ||||||| | || || || |||| | || || Sbjct 3248 ACACGCCAAAAGAAAGACCGTCACTGCCATGGACGTTGTTTACGCTCTGAAGAGGCAGGG 3307 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | || ||||| || |||| Sbjct 3308 ACGCACCCTCTACGGTTTCGGTGGTTA 3334 >seq8823 Length=18914 Score = 122 bits (134), Expect = 1e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| || ||| | ||||| || || ||||||||||| ||||| | || Sbjct 4126 AGGTATCACAAAGCCGGCAATCAGGCGTCTTGCCCGACGTGGTGGAGTGAAGCGAATTTC 4067 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | | || ||||| | ||| | ||| | || | |||||| ||| ||| || | Sbjct 4066 TGGTCTTATTTACGAAGAAACTCGAGGTGTCCTAAAAGTGTTCCTCGAGAACGTCATTCG 4007 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGT 16650 |||||| || || || |||||||| ||| | |||||||| || | |||||| | || Sbjct 4006 CGATGCTGTCACATACACGGAGCACGCGAAAAGAAAGACTGTGACTGCAATGGATGTAGT 3947 Query 16651 CTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| |||| | || ||||| | |||| ||||| || Sbjct 3946 CTATGCTCTGAAGAGGCAGGGCCGCACTCTTTACGGTTTCGG 3905 >seq30340 Length=220 Score = 111 bits (122), Expect = 2e-20 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||||||||||||||| || |||||||| || || || Sbjct 169 CGCCAAGCGTCATCGGAAAGTTCTTCGAGATAACATCCAGGGTATCACCAAACCGGCCAT 110 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| |||||||| || || |||||| | || || || | || || |||| Sbjct 109 TCGTCGTTTGGCACGTCGTGGCGGTGTAAAGCGTATTTCCGGCCTGATTTACGAGGAGAC 50 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || | |||| | || | || || ||| ||| |||| || ||| || Sbjct 49 CCGGGGTGTTCTCAAAGTGTTTCTTGAGAACGTCATCCGGGACGCTGTC 1 >seq19513 Length=1452 Score = 102 bits (112), Expect = 1e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| ||||||||||| || ||||| ||||| || || Sbjct 463 CGCCAAGCGTCATCGAAAAGTTCTTCGGGATAACATCCAGGGTATCACGAAGCCGGCCAT 522 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||| |||| |||||||| || || |||||| |||| || || | || || |||| Sbjct 523 TCGTCGTTTGGCGCGTCGTGGCGGTGTGAAGCGTATCTCCGGTCTGATTTACGAGGAGA 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79044329338452