Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2599 327 1e-84 seq19961 145 9e-30 >seq2599 Length=48712 Score = 327 bits (362), Expect = 1e-84 Identities = 981/1498 (65%), Gaps = 31/1498 (2%) Strand=Plus/Minus Query 61978 TTTTATCCTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGAT 62034 |||| |||| ||||| || || || || | |||| ||| || || || || | | Sbjct 37992 TTTTGTCCT-GTCCACAGTAAACTGGATAGCTTGAGC---TGCAGGCTTTGTGCGCAAGT 37937 Query 62035 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62094 | ||||| || || || ||||| || ||| |||||||| ||||| || ||||| Sbjct 37936 AATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTAC 37877 Query 62095 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62154 |||| | | || || || || | || | || || ||||| ||||| || || || | Sbjct 37876 TATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGC 37817 Query 62155 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTC 62214 || || ||||| || ||||| |||| || || || ||||| | ||| |||| Sbjct 37816 GATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCA 37757 Query 62215 GCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTAT 62274 |||| | ||||||||||| || || || | || || | |||| || | Sbjct 37756 GCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCA----CCAGT 37701 Query 62275 TCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62330 || | | || | ||| |||| ||| || || | | || |||| | ||| | Sbjct 37700 TCGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGG 37641 Query 62331 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || ||||| ||||| || || ||||| |||| |||| || | |||||| || |||| Sbjct 37640 TTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCC 37581 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | || |||||||| || | || || || || ||||| || ||||| || |||| Sbjct 37580 TCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAAT 37521 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62508 | | ||| || | | |||| ||| || ||||| |||| || | ||||| | || Sbjct 37520 AGAAGACTGTTCCGTACGCCGT--GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCC 37463 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62568 ||||| | || || || | ||||| ||| | | || Sbjct 37462 AAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCG 37403 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 | || |||||||| ||||||| ||||| ||||||||||||||| || || ||||| | Sbjct 37402 AGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACG 37343 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 ||||||| ||||| ||||| || ||||| || || || || ||||||| ||||||| | Sbjct 37342 CACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGA 37283 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 | || | | | ||||| || || || | ||||| || |||||||| || || | Sbjct 37282 AAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGAC 37223 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 ||| | || || |||||||| || | || ||||| ||| ||| ||||||| Sbjct 37222 GATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTT 37163 Query 62809 TATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCG 62866 | || || |||| || | | | ||| ||| || || | ||| | || || ||| Sbjct 37162 TGTTAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAA 37104 Query 62867 CCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62926 ||| || | |||||| || | || | ||| || |||||||| || || | |||| Sbjct 37103 CCC-TCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATC 37045 Query 62927 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 62986 | | || || | || | || || || | |||| |||||| || ||||| | || Sbjct 37044 GGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTT 36985 Query 62987 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63046 ||||||||| ||||| |||||| |||||||| || || || | || || |||||||| Sbjct 36984 TTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTC 36925 Query 63047 AATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA-TTATAGATTTGTAT 63104 |||||| || | ||| || | ||| | | || |||| | | | | | || Sbjct 36924 AATCTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCG-TAAATAG 36867 Query 63105 CTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63164 | | ||| |||||||| | ||||| || ||||| |||||||| | | Sbjct 36866 CGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTT 36807 Query 63165 AATCCAGGACATTCATCCGGACACATCAACGACC-ACTCTCCGTCATCCTTCACTCGTTT 63223 || |||||||| | |||||||| | |||| ||| | | | ||| |||| Sbjct 36806 AAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGT-CATTATCGGCGACTCTACG 36748 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 63282 |||||| ||||||||||||||||| || ||| || ||||| | | | |||||| ||| Sbjct 36747 CATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCGA 36689 Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342 | || ||||| ||| || |||||||| | | ||| || ||||| || |||| | Sbjct 36688 TGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGAT 36629 Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402 | || || | | || |||| ||| ||||| ||||| || | || | || || |||| Sbjct 36628 AAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTAT 36569 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 | || || | | ||| || | ||||| || || | ||||| ||||| | ||||| Sbjct 36568 TGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATA 36511 >seq19961 Length=25414 Score = 145 bits (160), Expect = 9e-30 Identities = 434/666 (65%), Gaps = 13/666 (2%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||| || || || || ||||| || ||||| || |||||||| ||||||| || || | Sbjct 14864 TTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTG 14805 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||||||||| || ||||| || | | ||| | | | | | || || Sbjct 14804 CTCCATGAAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAG 14745 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || ||| || || || || || || ||||| | || || ||||| || | | Sbjct 14744 CAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCAT 14685 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 ||| || |||||| | || || || || ||||| || | ||||||||| | ||||| Sbjct 14684 GGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAAT 14625 Query 33252 AGATCTAACGGTTTCT----TCACTCGG-TGGATGCAATAAATGTTTAAACATCAAACAT 33306 || || |||| | ||||| | | || | | ||| ||||||||| || Sbjct 14624 ----CTGGTGGATTCTCTCCTGGCTCGGCTTGTTG-ACCAGATGCCAAAACATCAAGCAG 14570 Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 ||||| || |||| ||||| || | || || ||||| | ||||| ||| Sbjct 14569 GCGAACTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCG 14510 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 || | || || || || || | ||| || || || ||||| | ||| |||||||| Sbjct 14509 GGTAGGAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATG 14450 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATC 33483 || || || || || || || | | | ||| || || |||| ||| | ||| Sbjct 14449 CCCTCGACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATC 14390 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || | ||||| |||||||||||||| | || |||||||| || ||||| || ||| Sbjct 14389 CAGGCAAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAG 14330 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 || | || || | ||| | | || || | || || ||| |||||||||| Sbjct 14329 AGGTGGTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCC 14270 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 ||||||||||| || || |||||||| |||||||| || | ||||| || | ||| Sbjct 14269 GAATGAATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGC 14210 Query 33664 ACTTCT 33669 || ||| Sbjct 14209 ACGTCT 14204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622684285134240