Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5480 89.7 5e-13 seq19961 84.2 2e-11 >seq5480 Length=41483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || || ||| | || || ||||| | || | | Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| |||||| |||||||| || || || ||||||||| Sbjct 1567 GACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCAA 1626 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||||| || || || ||||| || || | | | | | ||||||||||||| Sbjct 1627 CAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAAT 1686 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||| || |||| ||||| || Sbjct 1687 ATTCAGAAGGAAAGCACACTCCACCTGGTACT 1718 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || || ||||| || ||||| || |||| ||| |||| | ||| Sbjct 1048 AAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGC 1107 Query 26826 AACGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || || ||||| | || || |||||| || |||||||| || || || || || Sbjct 1108 TCGGATACGATCGAAAACGTAAAGACAAAA-ATCCAGGACAAAGAGGGCATCCCGCCGGA 1166 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || || | |||| | |||||||||||| ||||| | | | | || || || Sbjct 1167 TCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTA 1226 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || || ||||| || | || || ||||| Sbjct 1227 TAACATCCAGAAGGAATCCACCCTTCACCTCGTCCT 1262 >seq19961 Length=25414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 ||||| || ||||| || || || || ||||| ||||| || | || || | | ||| Sbjct 14857 TACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTGCTCCATG 14798 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || ||||| ||||| | | ||| | ||||| || | | ||| | ||| || Sbjct 14797 AAATCGAAGGGATTCTCGGAGTTCCATAATTTGTCACAGTCTAGATCGCTAAGCAGGTGA 14738 Query 119766 TCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAGCGAC 119824 || ||||||||||||||||| | |||| ||| || | |||||||| | ||| || || Sbjct 14737 TCGGCCACAAACTCGATGTACTGCTTCATGAGATCGC-AGTTCATGCCGAGCATGGCAAC 14679 Query 119825 CGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 || | ||| | ||| | ||| |||| ||| || | ||||| || Sbjct 14678 AGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATC 14634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478460380534080