Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5480 118 9e-22 >seq5480 Length=41483 Score = 118 bits (130), Expect = 9e-22 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || || ||||| || ||||| || |||||||| |||| ||||| | | Sbjct 1048 AAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGC 1107 Query 24048 AACGACACCATCGAGCAAGTCAA-ACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || ||||| | || || |||||| || |||||||| ||||| || || || Sbjct 1108 TCGGATACGATCGAAAACGTAAAGACAAAA-ATCCAGGACAAAGAGGGCATCCCGCCGGA 1166 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| |||||| | |||||| ||||| ||||| | | | | | || ||||| Sbjct 1167 TCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTA 1226 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 |||||| || || ||||| || |||| Sbjct 1227 TAACATCCAGAAGGAATCCACCCTTCA 1253 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | ||||| ||||||||||| ||| Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| |||||| |||||||| ||||| || ||||||||| Sbjct 1567 GACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCAA 1626 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || |||| || || |||||||| || || | | | | ||||||| ||||| Sbjct 1627 CAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAAT 1686 Query 24171 ATTCAAAAAGAA 24182 ||||| || ||| Sbjct 1687 ATTCAGAAGGAA 1698 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| |||||||| |||| |||||| || Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || ||| ||| || ||||| || ||||| ||||| |||||| Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||||| | || || | | | | || || |||||| Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 1459 ATCCAGAAGGAATCCACTCTTCA 1481 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || ||||| |||| || | || || ||| | Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || |||||| || || || ||||| || ||||| || Sbjct 2639 GACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAG 2698 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || |||||||| |||||||||| | | | | | || || ||| Sbjct 2699 CAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAAC 2758 Query 24171 ATTCAAAAAGAATCTAC 24187 |||||||| || || || Sbjct 2759 ATTCAAAAGGAGTCGAC 2775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429759081873420