Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5480 118 1e-21 seq2599 118 1e-21 >seq5480 Length=41483 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | ||| | ||| |||||||| |||||||||||||| || |||||| Sbjct 2565 CGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCA 2506 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||| || || ||| |||| | |||||| ||||| || || || || || ||| Sbjct 2505 TCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTG 2446 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || || ||| ||| | | || | || ||| | | ||| | |||| |||| | Sbjct 2445 TCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATG 2386 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || || ||||| ||||| |||||||| Sbjct 2385 GTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 131010 ACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCAT 131069 |||||||||||| ||||| | || | |||||||||||||||||||||||| || | Sbjct 2803 ACCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAG 2744 Query 131070 GGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 |||||| || || ||||||||||| ||| |||| || | ||||||||| || ||||| Sbjct 2743 GGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGAT 2684 Query 131130 TCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTC 131189 || || || || || || ||| | | || | || || | | ||| | || Sbjct 2683 GCCCTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 131190 GACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || || ||||| || ||||| || ||||| ||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| ||||| || || ||||| | |||||| |||||| || ||||| || ||| | Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAA 1638 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | |||||| || || || ||||| || |||||||| ||| || || | | Sbjct 1637 ATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTT 1578 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | || || ||| ||||| |||| |||| |||||| ||||| || || || ||| Sbjct 1577 TCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACG 1518 Query 131224 AAAATCTGCAT 131234 ||||||||||| Sbjct 1517 AAAATCTGCAT 1507 >seq2599 Length=48712 Score = 118 bits (130), Expect = 1e-21 Identities = 602/946 (64%), Gaps = 34/946 (4%) Strand=Plus/Minus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || |||||||||||||| | |||||| || || ||| || ||| ||| | Sbjct 37643 TGGTTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTAC 37584 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 | |||| || || |||||||| || || || ||||||| ||| ||||||||| ||| Sbjct 37583 GCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCC 37524 Query 145175 A--CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTA---GCGTACCCC 145229 | || | || || || | |||||| || | | | | ||||| |||| ||| Sbjct 37523 AATAGAAGACTG--TTCCGTACGCCGTG-TTGTGCAATTTTCACTTTAAGTGCGT--CCC 37469 Query 145230 AATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGG 145289 | ||||| || ||||| || | || ||||||| || |||||||| || |||| | Sbjct 37468 AGTCCCAAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGA 37409 Query 145290 CGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT 145349 | || ||| | | | ||| |||| | | || || || || || || | Sbjct 37408 CAGGCGAGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTT 37349 Query 145350 CCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGC 145409 | | || ||| | |||||||| || || | |||| || ||| ||||| || Sbjct 37348 CTAACGCACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGC 37289 Query 145410 TCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGA 145469 | ||| | || | |||| | | ||||||||| || || || |||| || | || | Sbjct 37288 TATCGAAAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAA 37229 Query 145470 TGGGCCGAT---GTTTCATG--TTGCTCATCCTCGCCGACTCGATAGGATATCGATTACG 145524 | || |||| |||| || ||||| | || |||| | || || | | || Sbjct 37228 TTGGACGATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTA----ATAGGTAAC- 37174 Query 145525 GTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAA 145584 || |||||||| || | |||||| || | || || | | || |||| || Sbjct 37173 ATCAATAATTTTGTTAAGGTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAA 37114 Query 145585 GTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACA 145644 ||| | | |||| | ||| | | ||||| || | || || | |||||| Sbjct 37113 GTCGTAATAACCCTCCT------TGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACA 37060 Query 145645 AACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATT 145703 ||||| | || || || | || ||| | | | || | || ||||| ||| | Sbjct 37059 GACTGCAATTTCATCGGGAGACG-AGTACTCAATAACTTCTGTACATAAATTAGAACACT 37001 Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGT 145763 | || ||||| | ||||| ||||| || || | ||| || || |||||||||||||| | Sbjct 37000 TAATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATAT 36941 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAG-TCCTGCGCAC 145820 |||| |||||| || | ||| | || | ||| | || ||| | ||| || Sbjct 36940 ACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATAC---CAAAGTTTCTGAGCGG 36884 Query 145821 GCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 ||||||| | |||||||| || ||||||||| ||| | || |||||| | Sbjct 36883 GCACCTGTCGTAAATAGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTT 36824 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 || |||| ||| | || |||||| |||||||||||| || ||||| | | | Sbjct 36823 CTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGTCAT 36764 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTA 145986 | || ||| | |||||||| ||| || | ||| || || || Sbjct 36763 TATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGCATA 36718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471813586997760