Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5374 163 2e-35 seq5480 82.4 5e-11 >seq5374 Length=31672 Score = 163 bits (180), Expect = 2e-35 Identities = 286/410 (70%), Gaps = 16/410 (4%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTG--CGCCAAGGTCGAGGGTAAGGGAAACGGT 6257 ||||||||| |||||||||| | | ||| ||||||||| ||||| || || ||||| Sbjct 26678 GTTCTACCGTTACAAAATGC--CCAAGCTGATCGCCAAGGTAGAGGGCAAAGGCAACGGA 26735 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || || || || ||||||||| ||| | || ||||| ||||| ||||| | || Sbjct 26736 ATCAAGACTGTGATCGTCAACATGAGTGACATTGCGAAGGCACTCGGCCGCCCGCCGACA 26795 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 || || || || ||||| || |||||||| || | ||||| || ||||| ||| || Sbjct 26796 TATCCCACCAAGTATTTTGGATGCGAACTGGGTTCGCAGACCCAATTTGACTCCAAGAAA 26855 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || || | ||| || || || ||| || || ||| |||||||| | || |||||| Sbjct 26856 GATCGTTACATTGTAAATGGGCAGCACGACGCTAACAAATTGCAGGACATCCTCGACGGC 26915 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 |||||| |||| || || ||| | ||||| || || ||||| | | | |||| Sbjct 26916 TTTATTAAGAAGTACGTTCTATGTTCGTCGTGCGACAATCCCGAGACTGTCTTAACTGTG 26975 Query 6498 TCTACCAAGAGAAAC-----ACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCA 6552 || || ||||| | |||| | || |||||||| ||||| ||| ||| Sbjct 26976 -CTCCC----GAAACGTGCGATCATCACAACGGCGTGCAAAGCATGCGGCTACTCTGGTC 27030 Query 6553 AGCTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || |||| || | || || || ||||| ||||| |||||||| || || Sbjct 27031 AGTTGGAGACTAAC-CATAAGCTGAACACGTTCATTCTGAAGAACCCGCC 27079 >seq5480 Length=41483 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| ||| || || |||||| ||||| |||||||||||||| || | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||||| || || || || || || ||||| || | || | ||| || ||||| Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTG 2441 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | | || || | ||||| || | ||||| ||||| Sbjct 2440 AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTT 2381 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| |||||||| Sbjct 2380 GCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334809369645884