Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2599 318 7e-82 >seq2599 Length=48712 Score = 318 bits (352), Expect = 7e-82 Identities = 979/1498 (65%), Gaps = 31/1498 (2%) Strand=Plus/Minus Query 61833 TTTTATCCTTGTCCAATGTGAATTGAATGG---GAGCGGATGCGGGTTTCGTACGTAGAT 61889 |||| |||| ||||| || || || || | |||| ||| || || || || | | Sbjct 37992 TTTTGTCCT-GTCCACAGTAAACTGGATAGCTTGAGC---TGCAGGCTTTGTGCGCAAGT 37937 Query 61890 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 61949 | ||||| || || || ||||| || ||| |||||||| ||||| || ||||| Sbjct 37936 AATACATGCCTGTCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTAC 37877 Query 61950 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62009 |||| | | || || || || | || | || || ||||| ||||| || || || | Sbjct 37876 TATAATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGC 37817 Query 62010 TGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTC 62069 || || ||||| || || || |||| || || || ||||| | ||| |||| Sbjct 37816 GATCGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCA 37757 Query 62070 GCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTAT 62129 |||| | ||||||||||| || || || | || || | |||| || | Sbjct 37756 GCTTGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCA----CCAGT 37701 Query 62130 TCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185 || | | || | ||| |||| ||| || || | | || |||| | ||| | Sbjct 37700 TCGTTACGCATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGG 37641 Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || ||||| ||||| || || ||||| |||| |||| || | |||||| || |||| Sbjct 37640 TTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCC 37581 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | || |||||||| || | || || || || ||||| || ||||| || |||| Sbjct 37580 TCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAAT 37521 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62363 | | ||| || | | |||| ||| || ||||| |||| || | ||||| | || Sbjct 37520 AGAAGACTGTTCCGTACGCCGT--GTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCC 37463 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62423 ||||| | || || || | ||||| ||| | | || Sbjct 37462 AAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCG 37403 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 | || |||||||| ||||||| ||||| ||||||||||||||| || || ||||| | Sbjct 37402 AGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACG 37343 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 ||||||| ||||| ||||| || ||||| || || || || |||||| ||||||| | Sbjct 37342 CACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGA 37283 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 | || | | | ||||| || ||||| | ||||| || |||||||| || || | Sbjct 37282 AAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGAC 37223 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 ||| | || || |||||||| || | || ||||| ||| ||| ||||||| Sbjct 37222 GATGACGTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTT 37163 Query 62664 TATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCG 62721 | || || |||| || | | | ||| ||| || || | ||| | || || ||| Sbjct 37162 TGTTAAGGTTTCGTGTC-ACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAA 37104 Query 62722 CCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 ||| || | |||||| || | || | ||| || |||||||| || || | |||| Sbjct 37103 CCC-TCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATC 37045 Query 62782 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 | | || || | || | || || || | |||| |||||| || ||||| | || Sbjct 37044 GGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTT 36985 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 ||||||||| ||||| |||||| |||||||| || || || | || || |||||||| Sbjct 36984 TTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTC 36925 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA-TTATAGATTTGTAT 62959 |||||| || | ||| || | ||| | | || |||| | | | | | || Sbjct 36924 AATCTGGCTATCAAGAATAGCATACCA-AAGTTTCTGAGCGGGCACCTGTCG-TAAATAG 36867 Query 62960 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 | ||| |||||||| | ||||| || ||||| |||||||| | | Sbjct 36866 CGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTT 36807 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACC-ACTCTCCGTCATCCTTCACTCGTTT 63078 | |||||||| | |||||||| | |||| ||| | | | ||| |||| Sbjct 36806 AAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGT-CATTATCGGCGACTCTACG 36748 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||||| ||||||||||||||||| || ||| || ||||| | | | |||||| ||| Sbjct 36747 CATAAACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCGA 36689 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| ||| || |||||||| | | ||| || ||||| || |||| | Sbjct 36688 TGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGAT 36629 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | || |||| ||| ||||| ||||| || | || | || || |||| Sbjct 36628 AAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTAT 36569 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 | || || | | ||| || | |||||||| || || ||||| || || | ||||| Sbjct 36568 TGTATACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATA 36511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633364575614400