Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5480 113 4e-20 >seq5480 Length=41483 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || | |||||| | || ||||| || | Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| || || ||||| || || || Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCAG 2002 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| ||||||| || || ||||| | ||||||| |||||| || ||| ||||| Sbjct 2003 CAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAAC 2062 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||| |||||| ||| | || || Sbjct 2063 ATCCAGAAAGAAAGCACGCTCCATCTGGTACT 2094 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| | || || |||| || ||| | ||| Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| |||| ||||||| ||||| || || || || ||||| ||| Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| ||||| || || | ||||| | || || || Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 1459 ATCCAGAAGGAATCCACTCTTCA 1481 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 || ||| ||||||||| || || || || ||||| || || | || || |||| || | Sbjct 1043 ACAGAAAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCG 1102 Query 25051 AGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 | || || || ||||| | ||| ||||||| |||||||| || || || | Sbjct 1103 AAGGCTCGGATACGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGC 1162 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || ||| || | |||||||||||||||||| ||||||| | || || | | Sbjct 1163 CGGATCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAG 1222 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||| || || || || |||||||| || || Sbjct 1223 ATTATAACATCCAGAAGGAATCCACCCTTCA 1253 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 14/188 (7%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| | || | |||| || ||||||| |||||||||||| ||| Sbjct 2996 AATGCAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTC 3055 Query 25058 TGACACTATCGA--GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||| ||||| |||| | || |||| ||| || || || || ||| | ||||| Sbjct 3056 TGACACCATCGAACGTCA---AGGCTAAAATTCA-GGATAAGGAGGGCATTTCCCCTGAT 3111 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || ||||| ||||| | || || | ||||| |||| Sbjct 3112 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGATGCACT--------TTAC 3163 Query 25176 AATATTCA 25183 |||||||| Sbjct 3164 AATATTCA 3171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || ||| |||| || |||| || ||| | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | || | ||| ||||| || || ||||| |||||||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAA-GACAAGGAGGGCATTCCGCCTGACCA 2469 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || ||||| | || |||| |||||| || |||||||| Sbjct 2470 ACAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAA 2529 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||| | ||||| Sbjct 2530 CATTCAGAAGGAGTCAACCCTCCATCTGGTGCT 2562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433149686069660