Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq19961 149 7e-31 seq31125 86.0 7e-12 seq127 82.4 8e-11 >seq19961 Length=25414 Score = 149 bits (164), Expect = 7e-31 Identities = 365/549 (66%), Gaps = 6/549 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| || |||||||| ||| | ||| || ||||| || || | || Sbjct 14738 ATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCATGGCAAC 14679 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 ||| ||||| ||||| | ||| || | ||||| | || || || || | || | Sbjct 14678 AGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGATAATCTGGTG 14619 Query 93044 -ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTC 93102 ||| |||| || | | | || ||| || | || |||| ||||| || || || Sbjct 14618 GATT-CTCTCCTGGCTCG-GCTTGTTG-ACCAGATGCCAAAACATCAAGCAGGCGAACTC 14562 Query 93103 GGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAG 93162 ||||| | || || || ||||| || | ||| || ||| | || | || |||| || Sbjct 14561 CGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCGGGTAGGAG 14502 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 ||| |||||||| | ||| || || || || ||| || || || || || || || Sbjct 14501 TCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATGCCCTCGAC 14442 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 ||| || || || || | || ||| | | | ||| | | | |||||| | Sbjct 14441 GGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCGTTCCCGATCCAGGCAAG 14382 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| ||||| || || || || || || | || ||||| ||||| || |||| || Sbjct 14381 GGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAGAGGTGGTC 14322 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 ||||| | | ||| ||||| || | || ||| |||||||||||||| ||||| | Sbjct 14321 GCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCCGAATGAAT 14262 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 |||||||| || || || |||||||| || | || ||||| | |||||| ||||| Sbjct 14261 GTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCTCCGTCACCTGCACGTCTTG 14202 Query 93463 AGAAAATCT 93471 || || || Sbjct 14201 GGAGAACCT 14193 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 || || ||||| || || || || || ||||| || || || || || ||||| ||||| Sbjct 13652 CTTTCAACGAGGTTCTCGTTAACGATTCCATCAGAAGCCGCGAAGAACGCCAAAATATGT 13593 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 || | || | || | || ||| | | ||| || | | |||||||| | | Sbjct 13592 TTAAGGAATTCGCGTTCTTGGGGCTTTAGCCTTTGCCAGTCAGCCATATCTTTTGCCAAA 13533 Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 ||||| || || |||||||||||| |||| || || |||||||| ||| ||||| Sbjct 13532 TCGACCTCCTCAGTAGTCCAAAACGACGCTTGGGCCTTCTTGTACATCCTCCAGATGTCG 13473 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || | ||| || |||| ||||| ||||| || || ||| |||| || ||||| Sbjct 13472 GGGTACTCAATCGGGAATAGCACAAAGCGATTGGGATTTTCTCTTAGCAAAGGCTC 13417 >seq31125 Length=19562 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 |||||| |||||||||||||||||||| |||||||||| |||| | |||| | | Sbjct 7598 AGTCAGAATGGCCGAGTGGTCTAAGGCGGCAGATTTAAGCTCTGCT--CCTCGAAAGAGG 7541 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| |||||| Sbjct 7540 GCGTGGGTTCGAACCCCACTTCTGACA 7514 >seq127 Length=5949 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 |||||| ||||||||||||| |||||| |||||||||| |||| | |||| | | Sbjct 2673 AGTCAGAATGGCCGAGTGGTCCAAGGCGGCAGATTTAAGTTCTGCT--CCTCGTAAGAGG 2730 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||| |||||| Sbjct 2731 GCGTGGGTTCGAACCCCACTTCTGACA 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556625776899360