Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2599 127 2e-24 seq5480 122 7e-23 >seq2599 Length=48712 Score = 127 bits (140), Expect = 2e-24 Identities = 682/1080 (63%), Gaps = 31/1080 (3%) Strand=Plus/Minus Query 128780 TGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTG 128839 ||||||| ||||| | ||||| | ||||| ||||| |||||||| || |||||||||| Sbjct 37984 TGTCCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAATACATGCCTG 37925 Query 128840 TTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCA----ACAATGCGTAGGTG 128895 | || | ||| | ||| || | ||| || | |||| || || | | Sbjct 37924 TCTTGAGACCAAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTACTAT----AATTT 37869 Query 128896 GGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCA 128955 | || | || || || || || || ||||| || ||||| | ||||||||||| Sbjct 37868 GTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGATCGGCT 37809 Query 128956 GCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACG 129015 ||||| || | ||| ||| || |||||||| || ||||||| | | Sbjct 37808 GCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCTTGAGA 37749 Query 129016 TGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGC 129075 | || ||| || | | || || || ||||||| || | | || ||| ||| Sbjct 37748 TCTTCTGGAATATTG---AGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCGTTACGC 37692 Query 129076 ATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACT 129135 ||| ||| | |||| ||||| | | ||| | ||| | | ||| | ||| Sbjct 37691 ATCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCACTACC 37632 Query 129136 TGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGAT 129195 ||||| || || | ||| || || ||| | || | || | ||| ||| ||||| ||| Sbjct 37631 TGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCAATGGAT 37572 Query 129196 TCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAG 129255 ||||| ||||| | ||| || || || | || ||||||||| ||||| ||| | Sbjct 37571 TCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAAGACTG 37512 Query 129256 TTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCC-AGTCCCACATCGATGT 129314 || || | ||||| ||| ||| | | ||||| || |||| ||||||| | || || Sbjct 37511 TTCCGTACGCCGTGTTGTGCAATTT-TCACTTTAAGTGCGTCCCAGTCCCAAAGAGAAGT 37453 Query 129315 GGGTGTGTGATTCCACAAGTCGTATTGCAATATACCC----AAACTGGCGGGACTGGAAA 129370 || ||| | ||||| || || |||||||||||| | || |||| | | || Sbjct 37452 AGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGCC----AA 37397 Query 129371 AGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAA 129430 || | |||| ||| | | | | || | ||| || || ||||| || || || Sbjct 37396 CATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGT 37337 Query 129431 AATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA 129490 | ||||||||||| || || |||| | | | || | ||| ||| | || | Sbjct 37336 AGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTA 37277 Query 129491 TACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 ||||| ||| ||| | || || | |||||| | || | ||| || || ||||| Sbjct 37276 GACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGATGAC 37217 Query 129551 TTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 | | ||| | || | | || || ||| | | || ||||||||||| | Sbjct 37216 GTTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTTAA 37157 Query 129611 -AATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACA 129669 ||| || ||||| |||||| || | |||||| ||| || | ||| | || | Sbjct 37156 GGTTTCGTG-TCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCCTC- 37099 Query 129670 TCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTT 129729 | |||||| |||||| | ||||| | ||| ||||| ||| |||| | Sbjct 37098 -----CTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTC-ATC 37045 Query 129730 TTGTCAC-TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATG 129788 | || |||||| | || ||| | || |||||| | ||||| || || | | Sbjct 37044 GGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTT 36985 Query 129789 CTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 | |||||| || || ||| || ||||| ||||| | ||| ||||| ||||| ||||| Sbjct 36984 TTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTC 36925 >seq5480 Length=41483 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || ||||| | || || || || || | | | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||||||||||||||| ||||| || || ||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || |||||| | |||||| |||||| | || ||||||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | ||| | || | ||| | || ||||| Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTGCTTCGACTCCGTGGAGG 2577 Score = 116 bits (128), Expect = 3e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || |||||| | || Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| |||||||||||||||||||| |||||||| Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATCAG 2002 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || |||||| | || ||| ||||| | ||| |||||| Sbjct 2003 CAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACAAC 2062 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 || || |||||| ||| | ||| | || | || ||||| || Sbjct 2063 ATCCAGAAAGAAAGCACGCTCCATCTGGTACTCCGTTTGCGTGG 2106 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| |||||| | || || || || || || | Sbjct 1278 GATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTC 1337 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | ||| |||||| || ||||||||||| || || || ||||| Sbjct 1338 TGACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCA 1397 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||||||||| || || ||||| |||||| |||| || || || Sbjct 1398 ACAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAA 1457 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || |||||||| Sbjct 1458 CATCCAGAAGGAATCCAC 1475 Score = 113 bits (124), Expect = 4e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | ||||| || ||| |||| || || ||||| | | Sbjct 2578 GATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTC 2637 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | || || |||||||| |||||||| || || ||||| || Sbjct 2638 AGACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCA 2697 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || ||||| ||| | || ||| ||||||| | || || ||||| Sbjct 2698 GCAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAA 2757 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 ||||||||| || || ||| | || | || | || |||||||| Sbjct 2758 CATTCAAAAGGAGTCGACCCTGCACCTTGTGCTTCGTTTGCGCGG 2802 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| |||||||| || || ||||| || || || || ||| | || || || || ||| Sbjct 1047 AAAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGG 1106 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | ||||| | || | | || |||||| || ||||| ||||| || || || || Sbjct 1107 CTCGGATACGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGCCGGA 1166 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || | | || |||||||||||||| |||| || ||| ||| |||| ||||| Sbjct 1167 TCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTA 1226 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||||||| | || | || | || | |||||||| Sbjct 1227 TAACATCCAGAAGGAATCCACCCTTCACCTCGTCCTCCGTCTCCGCGGAGG 1277 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || | ||||| ||||| | ||||| ||||| || ||| Sbjct 1506 GATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAG 1565 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | | ||| ||| || |||||||| ||||| || ||||||||||| Sbjct 1566 TGACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCA 1625 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || || || || || || | ||||| |||||| || ||| || || Sbjct 1626 ACAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAA 1685 Query 22398 CATTCAAAAAGAA 22410 ||||| || ||| Sbjct 1686 TATTCAGAAGGAA 1698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||| | |||| || || |||| || |||||||| | Sbjct 2997 ATGCAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTCT 3056 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| |||||||| || |||||||| ||| | || ||||| Sbjct 3057 GACACCATCGA--ACGTCAAGGCTAAAATTCAGGATAAGGAGGGCATTTCCCCTGATCAG 3114 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 || ||||| || || ||||| |||||| | ||||| Sbjct 3115 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAGGA 3149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419555282452660