Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq29777 122 2e-22 seq27646 98.7 2e-15 seq5681 96.9 7e-15 seq21690 95.1 2e-14 seq27404 93.3 9e-14 seq18082 91.5 3e-13 seq21589 89.7 1e-12 seq9763 89.7 1e-12 >seq29777 Length=19435 Score = 122 bits (134), Expect = 2e-22 Identities = 242/352 (69%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATG-ATGTGGAGCGTTCTATTCC 218576 |||||| | |||| ||||| ||||| ||||| | ||| | || || || ||||| Sbjct 14097 GACTTCGTGCACAAAGAGCTGATTCTGTTCTC-CAACATGGACAACGAACGATCCATTCC 14155 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 || | || || |||||||| ||||||||| | || || | |||||| | Sbjct 14156 ATCATTGATTGACGGTCTCAAGCCTGGACAGCGTAAGGTACTGTTCACATGTTTCAAGAG 14215 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | ||| | ||||| || ||||| | |||| || ||||||| || | Sbjct 14216 AAACGACAAGCGGGAAGTGAAGGTGGCGCAGTTGGCCGGTTCCGTCGCCGAAATGTCAGC 14275 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTATG 218755 |||||| |||||||||||| || || | || | || || | |||| ||| ||| | Sbjct 14276 CTACCACCACGGTGAGCAGTCGCT-CATGATGACAATCGTCAACCTGGCGCAGAACTTCG 14334 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGG 218815 ||||||| |||||||| ||| |||| | |||| |||||||| || | || || || Sbjct 14335 TGGGCAGCAACAACATCAACCTGCTACAGCCCATTGGTCAGTTCGGCACGCGGCTGCAGG 14394 Query 218816 GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGT 218867 |||| ||||| ||| || ||||||| || || ||||||||| |||||| Sbjct 14395 GTGGCAAGGACTCTGCGTCACCCAGGTACATTTTCACAAAGTTG-AGCCCGT 14445 >seq27646 Length=30510 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 9846 TGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAC 9787 Query 142112 CCCCGCCAGAGA 142123 |||||||| || Sbjct 9786 TCCCGCCAGGGA 9775 >seq5681 Length=27917 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 26414 GTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGACT 26355 Query 142113 CCCGCCAGAGA 142123 |||||||| || Sbjct 26354 CCCGCCAGGGA 26344 >seq21690 Length=11244 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 7374 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7433 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 7434 CCCACGTCGGGC 7445 >seq27404 Length=75800 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 67775 TGTCCCTGTAGCGCAGTGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAC 67834 Query 142112 CCCCGC 142117 ||||| Sbjct 67835 TCCCGC 67840 >seq18082 Length=14147 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1304 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1363 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1364 AGCCCCACGTTGGGC 1378 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 7063 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 7122 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 7123 CCCACGTTGGGC 7134 >seq21589 Length=34651 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 24597 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 24538 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 24537 CCCACGTTGGGC 24526 >seq9763 Length=63115 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1173 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1114 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1113 CCCACGTTGGGC 1102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 5850 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5909 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 5910 CCCACGTTGGGC 5921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027392156515524