Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5480 158 2e-33 seq19961 123 5e-23 >seq5480 Length=41483 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | || | ||| || ||||| || || ||||||||||| || ||| Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || || ||||| ||||| || || || || ||||| || || || Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || || |||| || || |||||| ||||| | | || || Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 ||||| || |||||| ||||| |||||||| || ||| ||||| | |||||||| Sbjct 2092 TACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTC 2033 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | ||| || || ||||| || || | || || ||||| ||||| || ||||||||||| Sbjct 2032 CAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTG 1973 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || | ||||||| || || ||||| || | ||| || ||||| ||||| || || Sbjct 1972 GATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTT 1913 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||||||||| ||||| Sbjct 1912 GCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||| || || || ||||| || || ||||| ||||| || Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||| || || ||||| ||||| | |||||||| || ||| Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||| || || |||||||| || || || Sbjct 2457 ATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACC 2398 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || |||||||| || ||||| || |||||||| |||||||| Sbjct 2397 TCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||| ||||| ||||| || || || || || | |||||||| | ||| Sbjct 2782 GTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTG 2723 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| || | || || |||||||| || ||||| ||||| ||||||||||| Sbjct 2722 CTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGAATCTT 2663 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||| ||||| ||||||| | || || |||| ||||| || ||||| || Sbjct 2662 GGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGT 2603 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || ||||| Sbjct 2602 CAGCGTTTTCACAAAAATTTGCAT 2579 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 68238 CCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT 68297 || ||||| || | ||||| ||| || ||| || || || || ||||| ||| ||| Sbjct 1730 CCACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGG 1671 Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || | || || || | ||||| || ||||| ||||| | ||||| |||||||| ||| Sbjct 1670 GTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATG 1611 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || || |||||||| ||||||| || ||| || || ||||| | || ||||| Sbjct 1610 CCCTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCG 1551 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || |||||||| || ||||||||||| ||||| |||||||| Sbjct 1550 AGAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || || | || | ||| || ||||| || || |||||||||||||| ||| Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| || ||||||| || || ||||| || || | || || || || || || Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| || || |||| ||| ||| ||||| || || | ||| || Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACG 1098 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || || || || || | || |||||||| || |||||| Sbjct 1097 TCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATT 1050 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/228 (70%), Gaps = 13/228 (6%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| | || || |||| ||| || || ||||| | | || || ||| Sbjct 3210 CCTCCGCGCAAACGAAAGACCAGGTGGAGGGTCGACTCCT---GAATATTGTAA------ 3160 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||| | || || || | ||| || |||||||| || || | || || || || | | Sbjct 3159 AGTG--CATCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAA 3102 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || ||||| || ||||||||| ||||||||||| | | || ||| Sbjct 3101 ATGCCCTCCTTATCCTGAATTTTAGCCTTGACGT--TCGATGGTGTCAGACAACTCCACT 3044 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| ||| | ||||| || | || || || |||||| Sbjct 3043 TCGAGCGTGATGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCATT 2996 >seq19961 Length=25414 Score = 123 bits (136), Expect = 5e-23 Identities = 208/296 (70%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 9893 TTAGAAGTCTGCGTCAATTGCAAACACGTTGTCGTCGGCATT---CATGACGCCCGCCTT 9949 ||||||||||||||||| | |||||| | ||| || || ||||||||| || || Sbjct 14921 TTAGAAGTCTGCGTCAAGAGTAAACACTTGGTCCTCCTTTTTGGCCATGACGCCGGCTTT 14862 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 ||| |||||| || || |||||||||||| | ||||| || | ||| || |||| Sbjct 14861 CTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTCCATGGAGATTTGCTC 14802 Query 10010 CATGAAGTCAAAGGGGTTCTCGGCG--CCAAACTGCTTGGGGTAACCGAGTGCTGTGAAA 10067 |||||| || ||||| ||||||| | ||| | | ||| | | || | | | Sbjct 14801 CATGAAATCGAAGGGATTCTCGGAGTTCCATAAT--TTGTCACAGTCTAGATCGCTAAGC 14744 Query 10068 ATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCAT- 10126 | | | || ||||| |||||||||||||| |||| || || |||||||||| | ||| Sbjct 14743 AGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGTTCATGCCGAGCATG 14684 Query 10127 GCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGA 10182 || || || | || ||| | ||| |||| |||| | || ||||| |||| || Sbjct 14683 GCAACA-GGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCGCATCCTTGA 14629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921233429266080