Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq19961 280 3e-70 >seq19961 Length=25414 Score = 280 bits (310), Expect = 3e-70 Identities = 472/676 (70%), Gaps = 9/676 (1%) Strand=Plus/Plus Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 ||||||| |||| |||||| |||||||||||||||||||| || ||||| Sbjct 14192 CAGGTTCTCCCAAGACGTGCAGGTGACGGAGGCGCGCTGCTTCTACGGGTTTCAGATCAT 14251 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC 42592 || |||||| | || || || |||| | | |||||||| |||||| ||||| Sbjct 14252 GATGGAGAACATTCATTCGGAAATGTATTCTCTCTTACTCAACACCTACATCACCGATCC 14311 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | ||||| || || ||||| ||||| ||||||||||| |||||||| |||||||| Sbjct 14312 CCAGGAGCGCGACCACCTCTTCAACGCCATCGAGACGATGCCATGCATCAAAAAGAAGGC 14371 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 |||||||| || |||||||| || |||||| || | ||||||| | | || || Sbjct 14372 CGACTGGGCCCTTGCCTGGATCGGGAACGACGACGCCACCTACGGCGAGCGCGTCGTCGC 14431 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 || | ||||||||||||||||||||| || || |||||||| ||||||||| | || Sbjct 14432 GTTCGCGGCCGTCGAGGGCATCTTCTTCAGCGGAGCTTTCGCCTCGATCTTCTGGATGAA 14491 Query 42773 GCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | | | | | | | ||||| ||||||| | ||||| |||||| | || |||| Sbjct 14492 G-AAACGCGGACTCCTACCCGGGCTCACCTACAGTAACGAGCTCATCTCACGCGATGAGG 14550 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | |||||| ||| || |||||| | |||| | | || || ||||||| Sbjct 14551 GCATGCATACGGAGTTCGCCTGCTTGATGTTTT---GGCATCTGGTCAACAAGCCGAGCC 14607 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 ||||| | ||| || |||| ||| || || | ||||| ||||||||||||| Sbjct 14608 AGGAGAGAATCCACCAGATTATCAAGGATGCGGTAGCTATCGAACAGGAGTTCCTCACCG 14667 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 || | ||||| || || || ||||||||||| ||| |||||| |||||||| ||| Sbjct 14668 AGGCTCTGCCTGTTGCCATGCTCGGCATGAACTGCGATCTCATGAAGCAGTACATCGAGT 14727 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTG-- 43069 || ||||| || || || || | | | || | | | || || ||| | Sbjct 14728 TTGTGGCCGATCACCTGCTTAGCGATCT-AGACTGTGACAAAT-TATGGAACTCCGAGAA 14785 Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||| || |||||| | ||||| |||| ||||| || ||||| ||||||||||| Sbjct 14786 TCCCTTCGATTTCATGGAGCAAATCTCCATGGAAGGCAAAACTAACTTCTTCGAGAAGCG 14845 Query 43130 CGTCGCCGACTACCAG 43145 |||| || || ||| Sbjct 14846 TGTCGGGGAGTATCAG 14861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943940641640640