Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2939 96.9 3e-15 >seq2939 Length=42873 Score = 96.9 bits (106), Expect = 3e-15 Identities = 300/459 (65%), Gaps = 4/459 (1%) Strand=Plus/Minus Query 20212 CGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAG 20271 ||| || | ||| ||||| || ||||||||||| ||||| | |||| || | || Sbjct 15419 CGTATGGACAAAATCCCCAGGCTTAAGACCAGTATAGTGAGCGATGATATGCGTGAGCAG 15360 Query 20272 GGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAG 20331 | || ||||||||| || || || || | |||||||| | | || |||| Sbjct 15359 AGCGTACGAGGCAATGTTGAACGGCACACCTAGGCCCATGTCGGCACTGCGTTGGTACAA 15300 Query 20332 CTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAG 20391 ||||| || | |||||||| || || || || || | |||| || || ||||| Sbjct 15299 TTGACACGACAACTCACCGTTGGCAACGTAGAACTGCGCCAGGCAGTGGCACGGTGGAAG 15240 Query 20392 CGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGG 20451 ||||||| | |||||||| ||||| ||| | | ||| || | | || | ||| Sbjct 15239 CGCCATCTTCTTCAAGTCCGAGACATTCCAAGCAGATAAAATAATGCGGCGGTCATCCGG 15180 Query 20452 ATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTC 20511 |||| | | || | ||| | | | |||||||| ||||| | || ||||| Sbjct 15179 ATTAACCCTGAGCGTGTCGATAATCTGGGTAATTTGGTCAACGCCCTGATCCGTGTAGTC 15120 Query 20512 AGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCC 20571 || | | || ||| || || || ||||| | ||||||||| ||||| || || || Sbjct 15119 GGCGTGCATATCGCTGTATGCAGCTCCGAAGTGACGCCACTGGAAGCCGTATACGGGGCC 15060 Query 20572 CAAATCCCCCTCCCTTCTGTGCG-CCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCAT 20630 | ||| |||| ||| | ||| | | |||| || |||| || |||| || |||| Sbjct 15059 GAGATCGCCCT-CCTCCCGTGAGAAAAAGCCGAGCTTATCCAGAAATTCCCGCGATCCAT 15001 Query 20631 TTTTGTCCCATATCTTGACTCCTGTTCT-TGAAAGCTCC 20668 | || ||| || || || || |||| ||| || ||| Sbjct 15000 TGGCGTTCCAGATATTCACGCC-CTTCTCTGATAGATCC 14963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441186518609760