Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5480 165 2e-35 seq19961 100 7e-16 >seq5480 Length=41483 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| || || | ||||| || || | |||||||| || || |||||||||||| || Sbjct 1732 CACCACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGA 1673 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGA 288367 | ||||| ||||| || | ||| ||||| ||||| || |||||||||||| ||||| Sbjct 1672 GGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGA 1613 Query 288368 TTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTT 288427 | || ||||| || ||||| || | |||||||||||| || | || || | || |||| Sbjct 1612 TGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTT 1553 Query 288428 CGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || || || || ||||| || ||||| ||||| |||||||| Sbjct 1552 CGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||| | |||||||||||| ||||| || |||||| || ||||| || ||| Sbjct 2094 AGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCT 2035 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||||| ||||| || |||||||| ||| || ||| || || || || Sbjct 2034 TCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGA---TCGGGGGGAATACCCTCCTTG 1978 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || |||||||| | || |||||||| || | ||| || ||| || || | ||||| Sbjct 1977 TCTTGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATT 1918 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || |||||||||||||| ||||| Sbjct 1917 GTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 143 bits (158), Expect = 6e-29 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| |||| ||| ||| || ||||| ||||| || | | Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||||| |||||| || || || |||| | ||| ||| ||| Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || || ||||| ||||||||||| | || |||||||| || | ||| ||| ||| Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATC---CGAGCCTTCG 1101 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| || ||||||||||| |||| || |||||||| || |||||| Sbjct 1100 ACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATT 1050 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || ||||| |||| ||| ||| || ||||| |||||||| | | Sbjct 1505 CCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAG 1446 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || ||||| || || || |||||||| | ||||||| | ||| Sbjct 1445 AGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGG 1386 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||||||||| | |||||| || || || | || | || || Sbjct 1385 ATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG 1326 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 1325 TCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||||| ||| || ||||| | || || || || || || || || | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | ||||| || |||||||| ||||||||||| | || Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || |||| || || ||||| || | ||||| | || || Sbjct 2457 ATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACC 2398 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| || || || || || || || |||||||| |||||||| Sbjct 2397 TCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 98.7 bits (108), Expect = 2e-15 Identities = 124/168 (74%), Gaps = 8/168 (5%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG--- 288366 |||| |||||| || | |||||||| ||||||||||||||||| || ||| ||| Sbjct 3158 GTGCATCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTG---ATCAGGGGAA 3102 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| ||||| || || ||| ||| || | || | | || ||| Sbjct 3101 ATGCCCTCCTTATCCTGAATTTTAGCCTTGACG--TTCGATGGTGTCAGACAACTCCACT 3044 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||| |||| || || | || || || |||||| Sbjct 3043 TCGAGCGTGATGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCATT 2996 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | || ||||| || ||||| | || || || |||||| Sbjct 2769 TCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAG 2710 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||| || || ||||| || || || || || |||||| Sbjct 2709 ATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTGAATCTTGGCCTTAACGTTT 2650 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||||||||| |||||||| || || || Sbjct 2649 TCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACA 2590 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 2589 AAAATTTGCAT 2579 >seq19961 Length=25414 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTT-CTATGATCGGTATGAATGCCGATC 269170 |||| | |||||| | || ||| | || |||| | ||| |||| ||||| ||||| Sbjct 14648 CGAACAGGAGTTCCTCACCGAGGCTCTGCC-TGTTGCCATGCTCGGCATGAACTGCGATC 14706 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGA 269230 ||||||| || || ||||| || ||||| |||| | | | | || | | ||| | Sbjct 14707 TCATGAAGCAGTACATCGAGTTTGTGGCCGATCACCTGCTTAGCGATCTAGACTGTGACA 14766 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 || | | || || |||||||||||| || ||||| | ||| || | ||||| || | Sbjct 14767 AATTATGGAACTCCGAGAATCCCTTCGATTTCATGGAGCAAATCTCCATGGAAGGCAAAA 14826 Query 269291 CGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | ||||||||||| ||||||||| | || ||||| Sbjct 14827 CTAACTTCTTCGAGAAGCGTGTCGGGGAGTATCA 14860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179144080031992