Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5480 116 4e-21 seq10923 96.9 4e-15 seq25540 91.5 2e-13 seq25055 87.8 2e-12 seq11963 87.8 2e-12 seq7979 87.8 2e-12 seq27404 86.0 7e-12 seq24182 86.0 7e-12 >seq5480 Length=41483 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| ||| | || |||||| ||||| |||||||||| || || || | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| ||||| ||||| ||||| ||||| ||||| | || | || ||||||||| | Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCT-T 2442 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || | || || | | | | || | ||||||| | || || |||| ||| ||||||| Sbjct 2441 GAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTT 2382 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || || ||||| ||||| Sbjct 2381 TGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| || | |||||| ||||| |||||||| || || || || || |||| || Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| ||||| ||||| || |||| ||| | || ||| ||||| | Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || ||| ||| | | | | |||||| || | || || |||| || ||||||||| Sbjct 1595 ATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTG 1536 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || || || ||||| Sbjct 1535 CCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | ||| | |||| || |||||||||||| ||||| || | || || || Sbjct 2796 AAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGG 2737 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || |||||||| || ||||| || | | ||||||||||| || | || |||| Sbjct 2736 CCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCC 2677 Query 42111 TTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || | | ||| | || | | | || | | | ||||| || ||||| || | || Sbjct 2676 TTAT-CTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGT 2618 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || ||||| || ||||| |||||||| Sbjct 2617 GATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 >seq10923 Length=28924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 20504 AAAAACTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 20563 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 20564 TAACCACTATACTAACGAGGA 20584 >seq25540 Length=47658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| |||||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 30069 AAAAAATTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 30010 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||| |||||| Sbjct 30009 GACCACTATACTAACGAGGA 29990 >seq25055 Length=46323 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3153 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 3212 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3213 ATACTAACGAGGA 3225 >seq11963 Length=27246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17778 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17719 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 17718 ATACTAACGAGGA 17706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 17933 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17874 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 17873 ATACTAACGAGGA 17861 >seq7979 Length=12407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 9662 AAAAATGAACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9603 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 9602 TAACCACTATACTAACGAGGA 9582 >seq27404 Length=75800 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 69438 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 69497 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 69498 TACTAACGAGGAATG 69512 >seq24182 Length=11470 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 7321 AAAAATAATCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 7262 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 7261 CTAACCACTATACTAACGAGGA 7240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542983537037760