Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5480 129 6e-25 seq2599 129 6e-25 >seq5480 Length=41483 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||||||||| ||||||||||| || || || || |||||||| || Sbjct 2554 ATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTG 2495 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 |||||| | |||| |||||||||||||| || || || || || ||||| ||| | | Sbjct 2494 TTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTC-TTGAATCT 2436 Query 138531 TTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAG 138589 | || |||| | ||| | ||||||| | | ||| ||||||| ||| | ||||| |||| Sbjct 2435 TCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAG 2376 Query 138590 TCAGAGTTTTTACAAAAATCTGCAT 138614 | || ||||| || || |||||||| Sbjct 2375 TGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| ||||| || |||||||| | || || |||||| ||||| || || | | Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAA 1638 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || ||||||||||| || || || || || |||||||| ||| ||| ||| | | | Sbjct 1637 ATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTT 1578 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||| | | ||| || |||| || | ||||| || || || || || || Sbjct 1577 TCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACG 1518 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 1517 AAAATCTGCAT 1507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 138391 CCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATA 138450 || |||||||| | || | || | | | ||||||||||||||||||||||| | Sbjct 2802 CCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGG 2743 Query 138451 GTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATA 138510 || || || ||||| || || || | |||| | | ||| ||||| || || || Sbjct 2742 GTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATG 2683 Query 138511 CCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTC 138569 || || || || ||| | || | |||| | ||| | ||||| | || ||||||||| Sbjct 2682 CCCTCCTTATC-TTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 138570 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | ||| || || ||||| ||||| |||||||| ||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 >seq2599 Length=48712 Score = 129 bits (142), Expect = 6e-25 Identities = 619/979 (63%), Gaps = 14/979 (1%) Strand=Plus/Minus Query 152999 CAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACAC 153058 ||||| |||| || | | ||| | ||||| || || ||||||||||| | |||||| Sbjct 37671 CAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCACTACCTGAAACTCGCCTGACAACAC 37612 Query 153059 TCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTG 153118 ||| | ||||||||| || ||| | | |||| |||||| |||||||| ||||| || Sbjct 37611 TCGGCGAGCATATACATTACTTGTGTACGCCTCAATGGATTCATTATTGCCAAGTATCTG 37552 Query 153119 AGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCG 153178 || || | ||| || |||||| |||| | | | ||||| | |||||| | Sbjct 37551 TGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAAGACTGTTCCGTACGCCGTGTTGTGC 37492 Query 153179 AATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTC 153238 ||| | | || | || | ||| ||||| || | | || || | |||||| || Sbjct 37491 AATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGAAGTAGGGGTGACACCCCACATATC 37432 Query 153239 GTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCG 153298 ||||| || | || | | | || ||| || | || ||| |||| || Sbjct 37431 ATACTGCAATATACCCTTAGAGACAGGCGAGCCAACATATGTCTCGTATGTGCCTTCAAC 37372 Query 153299 TTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTT 153358 | || ||||| ||||| || || | ||| || ||||| || ||||| || | ||| Sbjct 37371 CTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGTAGTAAATTGTTTCAAATATCTTTTT 37312 Query 153359 ATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGC 153418 || || | ||||| ||| ||| | || | |||| | | ||| || || || Sbjct 37311 GTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTAGACGCATTATGATAAAAGCATCTGC 37252 Query 153419 CAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGC 153478 ||||| || | || | || || || ||||| | ||||| ||| || || Sbjct 37251 AAGACCTTGTACGCCAATACCAATTGGACGATGACGTTTGTTGCCACGCTCAGCTTCCGG 37192 Query 153479 TATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTAT 153538 | || || | | ||| ||||||||||| ||||| || ||| | ||| || | Sbjct 37191 GACTGGGTAATAGGTAACATCAATAATTTTGTTAAGGTTTCGTGTCACAAGTTTCGTCAC 37132 Query 153539 CGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGC 153598 | | || | ||| | ||| || || || | | | || | ||||| | || Sbjct 37131 CTCTTTTAATTTTTGGAAGTC----GTAATAAC--CCTCCTTGACAAACCGATTGAGCGC 37078 Query 153599 AATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGG 153657 | ||| || ||||||||||| || | || || || | || ||||| | | || | Sbjct 37077 TAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAGACG-AGTACTCAATAACTTCTG 37019 Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717 || | || || || || || | ||||| |||||||| || || || || | Sbjct 37018 TACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATG 36959 Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACC 153774 | || ||| ||||||| ||||| ||| || || | || | || | || | ||| Sbjct 36958 CATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACC 36899 Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834 | || | ||| || ||||| | | ||||||||| || | |||||| |||| Sbjct 36898 AA---AGTTTCTGAGCGGGCACCTGTCGTAAATAGCGGCCTTCCATTTCGTATTTTTCGT 36842 Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894 ||| |||||||| || || |||||||| | || |||||| | ||||||| Sbjct 36841 ACAACTTGTCAAACTCTTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACA 36782 Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 | || ||||| | || | || ||| | ||||| |||||||| || | ||| || | Sbjct 36781 TAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTG 36722 Query 153955 CGTACATGAGGTCGCGCGC 153973 | || | ||| || ||||| Sbjct 36721 CATAGAAGAGATCACGCGC 36703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052952454080