Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5480 116 4e-21 seq19961 91.5 1e-13 >seq5480 Length=41483 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | ||||| ||| | || ||||| || ||||| |||||||| | Sbjct 2577 CCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGAC 2518 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || |||||||| || ||| |||| | ||||| || || || || Sbjct 2517 AAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGA 2458 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || ||| ||| | | ||| | |||||| | ||| || Sbjct 2457 ATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACC 2398 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | |||||||| || || ||||| || || |||||||| Sbjct 2397 TCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 126889 ACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCAT 126948 |||||| || || | ||| | || | || ||||| |||||||| ||||| || | Sbjct 2803 ACCGCGCAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAG 2744 Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 ||||| ||| || ||||| || || ||| ||||||| | |||||| ||||| || || Sbjct 2743 GGTGCGGCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGAT 2684 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 ||||||||| || || || ||| | | ||||| ||||| | ||| || || Sbjct 2683 GCCCTCCTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTC 2624 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| || |||||||| ||||| |||||||| ||||| Sbjct 2623 CAGTGTGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || || |||||||| || |||| | |||||| || || || || ||||||||| | Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAA 1638 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 || | ||||| |||||||| || |||||||| ||||| ||| || || | | | Sbjct 1637 ATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTT 1578 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||||| | ||||||||||| || | ||||||||||| || || || || Sbjct 1577 TCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACG 1518 Query 127103 AAAATCTGCAT 127113 ||||||||||| Sbjct 1517 AAAATCTGCAT 1507 Score = 102 bits (112), Expect = 8e-17 Identities = 161/227 (71%), Gaps = 13/227 (6%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| || || || |||| || | || ||||| | ||||||||||| | | Sbjct 3210 CCTCCGCGCAAACGAAAGACCAGGTGGAGGGTCGACTCCT---GAATATTGTAAA-GTGC 3155 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 ||| || || || ||||||||||| ||| |||||| ||||||||||| || | Sbjct 3154 ATC---CG----TCCTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAA 3102 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||||| ||||| |||||| |||||| | ||| ||| Sbjct 3101 ATGCCCTCCTTATCCTGAATTTTAGCCTTGA--CGTTCGATGGTGTCAGACAACTCCACT 3044 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || || |||| || |||| |||||||| ||||| Sbjct 3043 TCGAGCGTGATGGTCTTTGCGGTGAGTGTTTCCACAAAAATTTGCAT 2997 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 126889 ACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCAT 126948 ||| || || || | |||| ||| | ||| ||||| || || ||||| ||| || Sbjct 2107 ACCACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAG 2048 Query 126949 CGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTAT 127008 |||||| ||| || ||||||||||| ||| | || | |||||||||||||| || || Sbjct 2047 TGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAAT 1988 Query 127009 GCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 ||||||||||| |||||| ||||| | ||| | ||||| | || || || Sbjct 1987 ACCCTCCTTGTCTTGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTC 1928 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || |||||||| || || || || || || ||||| Sbjct 1927 CAATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || || || |||||| | ||| ||||| ||||| ||||||||||||||| |||| Sbjct 1424 TGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATT 1365 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || || | | |||| ||||| | |||||| |||| ||| | |||||||||| Sbjct 1364 TTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCG 1305 Query 127088 GTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || |||||||| Sbjct 1304 GTGAGGGTCTTCACGAAGATCTGCAT 1279 >seq19961 Length=25414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 47375 GGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAG 47434 |||||| || ||||||||||||| | | | | || |||||| || | |||| Sbjct 14654 GGAGTTCCTCACCGAGGCTCTGCCTGTTGCCATGCTCGGCATGAACTGCGATCTCATGAA 14713 Query 47435 AAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTA 47494 |||||||||| ||||| ||||| | |||||| | ||| | | | ||| | | Sbjct 14714 GCAGTACATCGAGTTTGTGGCCGATCACCTGCTTAGCGATCTAGACTGTGACAAATTATG 14773 Query 47495 CCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTT 47554 || |||||||||| ||||| || ||| | | || || | || ||||| || ||||| Sbjct 14774 GAACTCCGAGAATCCCTTCGATTTCATGGAGCAAATCTCCATGGAAGGCAAAACTAACTT 14833 Query 47555 TTTCGAGAAGCGCGTCGGCGAATAT 47579 ||||||||||| ||||| || ||| Sbjct 14834 CTTCGAGAAGCGTGTCGGGGAGTAT 14858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475300114887360