Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5480 114 1e-20 >seq5480 Length=41483 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45149 TTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTA 45208 |||||| || |||||||| ||||||| ||| | || |||| ||| ||||| ||| | Sbjct 1698 TTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAA 1639 Query 45209 TATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC 45268 || | || || || || || || ||||| ||||| ||||| || ||| ||| | Sbjct 1638 AATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTT 1579 Query 45269 TTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 ||| | ||||| | ||||||||||||||||| ||||||||||| || || || || Sbjct 1578 TTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCAC 1519 Query 45329 AAAAATTTGCATC 45341 ||||| |||||| Sbjct 1518 GAAAATCTGCATC 1506 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| ||||| || ||||| ||||| || || || ||||| Sbjct 2580 ATCCCTCCACGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCA 2521 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||||| || ||| | || | || || ||||| ||| Sbjct 2520 GACAAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGC 2461 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || || | ||| | ||||||| | ||| Sbjct 2460 GGAATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCA 2401 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| |||||||| || || ||||| || || || ||||| Sbjct 2400 ACCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || || || || || |||||||| ||||| |||||||| Sbjct 1280 ATCCCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCT 1221 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | |||||| || || | ||||| | ||||| |||||| Sbjct 1220 GAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGC 1161 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| ||||| || || |||||| || | ||| | || || || ||| Sbjct 1160 GGGATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCG 1101 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||| ||| || || || | ||||| || || |||||||| Sbjct 1100 ACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCAT 1051 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || || || || || |||||||| ||||| ||||| || Sbjct 1508 ATCCCTCCGCGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCC 1449 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||||||| || || || | |||| | || || || || Sbjct 1448 GAGAGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGA 1389 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCT--ACGGTGTCGGAAGAC 45287 || ||||| || || || || |||||| |||| || | |||| | ||||| || | | Sbjct 1388 GGGATGCCCTCCTTGTCCTGGATTTTT-GTTT--TCACATTCTCGATTGTGTCAGAGGGC 1332 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| |||| |||||||||||| || || || || || || |||||| Sbjct 1331 TCGACGTCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCATC 1278 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || |||||||| || || || || | ||| ||| || Sbjct 2788 CACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTC 2729 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || ||| | ||||| | |||||||| ||||| ||||| || |||||||| Sbjct 2728 GAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCTTG 2669 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | ||| | ||||| || | ||| || || || || | ||| || Sbjct 2668 AATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTCTT 2609 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || ||||| ||||||||||||||| Sbjct 2608 TCCGGTCAGCGTTTTCACAAAAATTTGCATC 2578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 |||||||| ||| | |||| || ||||| || || | |||||| || ||||| |||||| Sbjct 3140 TGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAAATGCCCTCCTTATCCTGAATT 3081 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || ||| | |||||| || |||| |||||||| || | || || || Sbjct 3080 TTAGCCTTGA-CG-TTCGATGGTGTCAGACAACTCCACTTCGAGCGTGATGGTCTTTGCG 3023 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| |||||||||||||| Sbjct 3022 GTGAGTGTTTCCACAAAAATTTGCAT 2997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451812432049440