Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq29777 118 1e-21 seq2599 118 1e-21 >seq29777 Length=19435 Score = 118 bits (130), Expect = 1e-21 Identities = 190/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 175898 TTTGTGAAGATGTACCTCGTTTGAGACGCA---TCTTTGCCACCCATGAGACGCGTCCCA 175954 |||||||| |||||||| | | |||||| || ||||||||| || ||||| || Sbjct 14434 TTTGTGAAAATGTACCTGGGT---GACGCAGAGTCCTTGCCACCCTGCAGCCGCGTGCCG 14378 Query 175955 AATTGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAAC 176014 || |||||| |||| || || ||||| ||||| ||||| ||| | ||||| Sbjct 14377 AACTGACCAATGGGCTGTAGCAGGTTGATGTTGTTGCTGCCCACGAAGTTCTGCGCCAGG 14318 Query 176015 TTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACA 176074 ||||| || || | ||| || |||||||| |||||||| ||| | || || || Sbjct 14317 TTGACGATTGTCATCATGAGCGACTGCTCACCGTGGTGGTAGGCTGACATTTCGGCGACG 14258 Query 176075 TACGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATAC 176134 | | ||||||||||||||||||| || |||| ||| | | ||| || | || Sbjct 14257 GAACCGGCCAACTGCGCCACCTTCACTTCCCGCTTGTCGTTTCTCTTGAAACATGTGAAC 14198 Query 176135 ATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 | ||||| | |||| ||||||||| ||||| Sbjct 14197 AGTACCTTACGCTGTCCAGGCTTGAGACCGTC 14166 >seq2599 Length=48712 Score = 118 bits (130), Expect = 1e-21 Identities = 449/700 (64%), Gaps = 10/700 (1%) Strand=Plus/Minus Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| | ||||| | | ||||| || || | || || || || || || ||||||||| Sbjct 37589 GTGTACGCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATG 37530 Query 115975 GGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCC 116034 || |||| ||||| ||||| || | || ||| | || || |||||| Sbjct 37529 GGAGCCAATAGAAGACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCC 37470 Query 116035 CAGTCGTAGTT-GAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 ||||| | || | | | | | ||||||||||| |||| | ||||| | || Sbjct 37469 CAGTCCCAAAGAGAAGTAGGGGTGACAC-CCCACATATCATACTGCAATATACCCTTAGA 37411 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 116153 | ||||| || || ||||||| |||| ||| |||||||| || | ||| |||| || Sbjct 37410 GACAGGCGAGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGC 37351 Query 116154 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTC 116213 || | || ||| || ||||| ||||| || || | | || | || || Sbjct 37350 TTCTAACGCACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGG 37291 Query 116214 GGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 116273 | ||| || | ||||| | ||||| |||| || |||||||| || || | || Sbjct 37290 GCTATCGAAAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACC 37231 Query 116274 AATTGGGCGATGTCTCATATTAG-ACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTAT 116332 |||||| ||||| | | || || || ||| | || || ||| | | || Sbjct 37230 AATTGGACGATGACGTTTGTTGCCACGCTC-AGCTTCCGGGACTGGGTAATAGGTAACAT 37172 Query 116333 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 116392 | |||| | || || ||| || |||| || || | || | | |||| | | | Sbjct 37171 CAATAATTTTGTTAAGGTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGT 37112 Query 116393 CAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 116452 | || | | || |||||| || | || || | || || |||||||| | Sbjct 37111 CGTAATAAC------CCTCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGA 37058 Query 116453 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAA 116512 | | | ||||| | | |||||| |||| ||| ||||| ||||| |||| ||||| Sbjct 37057 CTGCAATTTCATCGGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAA 36998 Query 116513 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATG 116572 | || || | ||| | |||||| ||| |||||| |||||||||||||||||||| | Sbjct 36997 TCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACG 36938 Query 116573 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 | || || || || | ||| | |||||||| | ||| Sbjct 36937 GGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCA 36898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613248269286240