Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5480 143 6e-29 >seq5480 Length=41483 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || |||||||||||||| | ||||||||| | | || | |||||| Sbjct 2790 AGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCT 2731 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | | ||||||||| || || || || || Sbjct 2730 TCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTATCT 2671 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| ||||| ||||||| | || || |||| ||||||||| Sbjct 2670 TGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATCGTC 2611 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||||||||||||||| Sbjct 2610 TTTCCGGTCAGCGTTTTCACAAAAATTTG 2582 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || || || ||||| || |||||||| || | |||||| |||| ||| || Sbjct 2571 CGGAGTCGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTG 2512 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || || ||||||||||||||||| ||||| || ||| || Sbjct 2511 CGACCATCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCC 2452 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || ||| | |||||| ||| || || || | | Sbjct 2451 TCCTTGTCTTGAATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGC 2392 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| || || || || Sbjct 2391 GTAATGGTTTTGCCAGTGAGCGTTTTGACGAAGATCTG 2354 Score = 114 bits (126), Expect = 3e-20 Identities = 150/207 (72%), Gaps = 13/207 (6%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| |||||||| |||||||||| | | ||||| |||| | ||| || || Sbjct 3193 GACCAGGTGGAGGGTCGACTCCT---GAATATTGTA--------AAGTGCATCCGTCCTC 3145 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||||| |||||||||||||| ||||||||||| || || |||| || || ||||| Sbjct 3144 GAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGATCAGGGGAAATGCCCTCCTTATCCTG 3085 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| || ||| ||| ||||| |||||| | || || || | |||||| ||||| Sbjct 3084 AATTTTAGCCTTGACG--TTCGATGGTGTCAGACAACTCCACTTCGAGCGTGATGGTCTT 3027 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| |||| |||||||||||| Sbjct 3026 TGCGGTGAGTGTTTCCACAAAAATTTG 3000 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| || || || |||| ||||||||| || || | |||||| Sbjct 2094 AGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCT 2035 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| ||||| ||||| || ||||||||||| || || ||| || || || Sbjct 2034 TCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCT 1975 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| ||| | ||||| | | ||| || ||||| ||||| ||| Sbjct 1974 TGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTC 1915 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| Sbjct 1914 TTGCCGGTGAGGGTCTTGACGAATATTTG 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178411597042188