Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5480 136 4e-27 >seq5480 Length=41483 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 ||||| | ||| || |||| || ||||||||| || |||||||| || || ||||| Sbjct 2796 AAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGG 2737 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 | || |||||||||||||| ||||| ||||| | ||||||||||| ||| | || |||| Sbjct 2736 CCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCC 2677 Query 46496 TTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTG 46555 || || ||||| ||| | | | | ||||| || ||||| |||| ||| Sbjct 2676 TTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTG 2617 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || ||||||||||| ||||| |||||||| Sbjct 2616 ATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | || |||||| || || ||||| || || | ||||| | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||| || || ||||| || | ||||| ||||| | ||| | || ||||||||| Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTG 2441 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||| | | | | |||||||| | || || || | ||| |||||||| Sbjct 2440 AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTT 2381 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||||||| || ||||| ||||| Sbjct 2380 GCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| || ||||| || ||||| |||||| || ||||| |||| || Sbjct 1715 ACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACCGTCCTCC 1656 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| || ||||| || | ||||| || |||| || | || ||| ||||| | Sbjct 1655 AGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGG 1596 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | || | | | | |||||| || | || || || | || ||||||||| Sbjct 1595 ATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTG 1536 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || || ||||| Sbjct 1535 CCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/225 (70%), Gaps = 11/225 (5%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || || || || || || || |||| || || || |||||||| || Sbjct 1241 TCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAA 1182 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | ||| | || ||| |||||| ||| || |||| | | Sbjct 1181 ATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTT 1122 Query 46523 GCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||| || ||| ||| || || | || || || || || |||| |||||| Sbjct 1121 TCGATCGTATC---CGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTG 1065 Query 46580 ACAAAGATTTGCATTTTGC----ACAAACAACACGCCGAATACGA 46620 || |||||||||||||| | | ||| |||||| | || |||| Sbjct 1064 ACGAAGATTTGCATTTTTCTGTGAGAAAGAACACGAC-AAAACGA 1021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || ||||| || || |||||| |||| || | ||||||||||| || Sbjct 1469 TCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTGCTTGCCGGCAAAG 1410 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||| || || | || | || |||||||||| ||| || | || | || Sbjct 1409 ATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTTTGTTTTCACATTC 1350 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | || || |||||||| || || || || || Sbjct 1349 TCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGTGAGGGTCTTCACG 1290 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 1289 AAGATCTGCAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564999841133280