Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq19961 309 3e-79 seq5480 167 2e-36 >seq19961 Length=25414 Score = 309 bits (342), Expect = 3e-79 Identities = 484/685 (71%), Gaps = 8/685 (1%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| ||| ||||| || || || ||||| || || |||||||| || || Sbjct 14876 CATGACGCCGGCTTTCTGATACTCCCCGACACGCTTCTCGAAGAAGTTAGTTTTGCCTTC 14817 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || ||| || || ||| ||||| ||||| || | | ||| | | || || | | Sbjct 14816 CATGGAGATTTGCTCCATGAAATCGAAGGGATTCTCGGAGTTCCA-TAATTTGTCACAGT 14758 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAAT 132769 | || ||| ||||| |||||||| ||||||||||| ||| |||| ||||| | Sbjct 14757 CTAGATCGCTAAGCAGGTGATCGGCCACAAACTCGATGTACTGCTTCATGAGATCGCAGT 14698 Query 132770 TAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCG 132829 | | || |||| || ||||| || |||||||| || || ||||| || |||| Sbjct 14697 TCATGCCGAGCATGGCAACAGGCAGAGCCTCGGTGAGGAACTCCTGTTCGATAGCTACCG 14638 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCC-GTTGCACCAAATGCTTGAAC 132888 | || ||| || | | | | || ||||||| |||| |||| |||| ||| Sbjct 14637 CATCCTTGATAATCTGGTGGATTCTCTCCTGGCTCGGCTTGTTG-ACCAGATGCCAAAAC 14579 Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAA 132948 |||||||| || || || ||||| |||||| || | || ||||| ||||| ||| | Sbjct 14578 ATCAAGCAGGCGAACTCCGTATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAG 14519 Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 || | ||||| | ||| |||||||| || | ||| || || | ||||||| || Sbjct 14518 GTGAGCCCGGGTAGGAGTCCGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTG 14459 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG 133068 ||||||| |||||||||||||||||| || || | |||||||||| | ||||| || | | Sbjct 14458 AAGAAGATGCCCTCGACGGCCGCGAACGCGACGACGCGCTCGCCGTAGGTGGCGTCGTCG 14399 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 | |||||||| || ||||| |||||||| | ||||| ||| |||||||| |||||| Sbjct 14398 TTCCCGATCCAGGCAAGGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATG 14339 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACG--CACGTAGGTGTCGATGAGGGTCG 133186 ||||| | | | | || | || | | ||| || | |||||||| || | | | Sbjct 14338 GCGTTGA--AGAGGTGGTCGCGCTCCTGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAG 14281 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 ||||||||||||| || | ||||||||| ||| ||||| ||||| ||||| ||||||| Sbjct 14280 AATACATTTCCGAATGAATGTTCTCCATCATGATCTGAAACCCGTAGAAGCAGCGCGCCT 14221 Query 133247 CGACCACCTGCACTTCTTGAGCGAA 133271 | ||||||||| ||||| | ||| Sbjct 14220 CCGTCACCTGCACGTCTTGGGAGAA 14196 >seq5480 Length=41483 Score = 167 bits (184), Expect = 2e-36 Identities = 174/222 (78%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| ||||| || ||||| | || || || | || Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 38304 GACA-GCGTGCAAACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || ||||| | |||| ||||||| ||||| ||||| |||||| |||| | Sbjct 1943 GACACGATTGAAAACG--TCAAGACTAAAATCCAAGACAAGGAGGGTATTCCCCCCGATC 2000 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| |||||| ||||||||||| || | ||||| || |||||||||| Sbjct 2001 AGCAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGATGGTCGCACACTGAACGACTACA 2060 Query 38422 ACATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||||| |||| |||| ||||| ||| |||| || |||||| Sbjct 2061 ACATCCAGAAAGAAAGC-ACGCTCCATCTGGTACTCCGTTTG 2101 Score = 150 bits (166), Expect = 2e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||| || |||| |||||| ||| Sbjct 1507 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAGT 1566 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | ||| ||| |||| ||||||||||| || || |||| || Sbjct 1567 GACACGATTGAAAACG-TGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCA 1625 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| || || || ||||| |||| |||||||||| |||||| || Sbjct 1626 ACAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAA 1685 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| || || || |||| || ||| Sbjct 1686 TATTCAGAAGGAAAGCACACTCCACCTGGTACTCCGT 1722 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||||||||| ||||||||||| || |||| || ||| | | | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| |||| || || | ||||| ||||| ||||| | |||||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | |||||| |||||||| || || | |||||| | || |||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || || ||| ||||||| || Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTGCTTCG 2565 Score = 129 bits (142), Expect = 6e-25 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 |||||||||||| ||||| |||||| | || || || || || ||| |||||||||| | Sbjct 1047 AAAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGG 1106 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCC- 38357 | | || | || | || | |||||| |||||||| ||||||||||| | ||||||| Sbjct 1107 CTCGGATA-CGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCA-TCCCGCCG 1164 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||| || | |||| || |||||||| || || |||| || |||||| || Sbjct 1165 GATCAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGAT 1224 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || |||||||| |||||| | || || || | || || ||| Sbjct 1225 TATAACATCCAGAAGGAATCCACCCTTCACCTCGTCCTCCGT 1266 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| |||||||| || ||| ||||||||||| || | Sbjct 1279 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTCT 1338 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| |||||||| ||||| ||||| || || | || ||| Sbjct 1339 GACACAATCGAGAATGTGAAAACAAAAATCCAGGACAAGGAGGGCATCCCTCCTGATCAA 1398 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| || |||| |||| |||||||||| ||||| ||| Sbjct 1399 CAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATAAC 1458 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || | || || ||| Sbjct 1459 ATCCAGAAGGAATCCACTCTTCACCTCGTCCTCCGT 1494 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||||| || || || || ||||| | || || ||| | | Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| |||| | || || | || || ||||| || || ||||||| Sbjct 2639 GACACAATCGAAAACG-TTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCA 2697 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||||||||| ||||| || || | |||||||| |||||||| Sbjct 2698 GCAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAA 2757 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||| |||||||| |||| ||||| | ||||| |||||| Sbjct 2758 CATTCAAAAGGAGTCGACCCTGCACCTTGTGCTTCGTTTG 2797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499961702069760