Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18132 178 5e-39 seq11351 172 2e-37 seq11007 125 3e-23 seq31781 87.8 7e-12 >seq18132 Length=104847 Score = 178 bits (196), Expect = 5e-39 Identities = 462/697 (66%), Gaps = 22/697 (3%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 || || ||||| || || |||| || ||||| || || | ||||||||| || || || Sbjct 84429 GGCATCGATCTCGGTACAACCTACTCGTGTGTTGGCGTCTTCCAAAATGGCAAAGTGGAG 84488 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || |||||||| || || || || || || ||| || || || || | Sbjct 84489 ATCATTGCAAATGATCATGGCCTTCGGACCACCCCATCAGTAGTCGCCTTCACTGACACG 84548 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAAATC--AATGGTAAATTCAAATGCCAAAAACACAG 451097 ||| | || ||||| | | || || | || | | || || | ||||||||| Sbjct 84549 GAACGCTTTATAGGGGATCCAGCCAAGGCGCAAGCATCACTT--AACCCGAAAAACACAA 84606 Query 451098 TATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGAT-GATACTGTACAAAAAGAG 451156 | | |||||||||| | | |||||| | || || | || | || ||| | || Sbjct 84607 TTTTTGATGCTAAAAGGCTGATTGGCAGGCGGTTCGACTCTAGAGAA-GTTCAAGACGAT 84665 Query 451157 AAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAAT 451216 | ||| || | | | ||| | ||| | || | ||||| | | ||||| | Sbjct 84666 ATGAAAACCTGGCCATTCGTTGTGATCAATGATAATGACAAGCCGAAAGTACAAGTTACG 84725 Query 451217 TATAAAGGTGAAACT-AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAA 451275 | |||| || || ||||| ||||||||||||||||| ||| | ||||| || ||||| Sbjct 84726 TTTAAAAAA-AACCTCAAAACATTTGCTCCTGAAGAAATATCAGCCATGGTCCTGACTAA 84784 Query 451276 AATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||||||| | ||| ||| || ||||||| || || ||||||||||| || || Sbjct 84785 AATGAAAGATATAGCCGAAATTTACCTTGGTTCGAAGGTAACAGATGCAGTAATCACGGT 84844 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 |||||||| || || || |||| |||||||| || |||||||| || ||| || || Sbjct 84845 ACCCGCTTACTTTAACGACTCACAGCGGCAAGCTACGAAAGATGCTGGCTCTATAGCCGG 84904 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 | ||||| | || || ||||||||||| || || |||||| | ||||| || ||| Sbjct 84905 ACTGAATGTCTTGCGTATAATTAATGAACCAACTGCTGCTGCTATCGCATACGGTTTAG- 84963 Query 451456 AAAATCAAAAGAAACAGAA----GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAA 451511 | || |||| ||| || |||| || | | |||||| ||||||| || | Sbjct 84964 ------ATAAAAAACTGAAGGGCGATCAAAACGTTCTTATTTTTGATCTTGGTGGTGGGA 85017 Query 451512 CTCATGATACTTCTGTACTTTCAATTGAAGATGGG---GTATTTGAAGTAAAGGCAACCA 451568 | |||| ||| | | | ||| || ||| | ||||| || || || ||| Sbjct 85018 CATTTGATGTTTCCATCTTAACTGTTGGTGACGGGTCAATGTTTGAGGTTAAAGCCACCT 85077 Query 451569 ATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | |||||||| || || |||||| |||| || Sbjct 85078 CAGGAAACACTCATCTTGGTGGAGAAGATTTTGACAA 85114 >seq11351 Length=69474 Score = 172 bits (190), Expect = 2e-37 Identities = 460/692 (66%), Gaps = 27/692 (4%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || |||||||| ||||| || | ||| ||||| || || | | ||||||| |||| Sbjct 59414 ATCGGTATTGATCTCGGAACGACGTATTCGTGTGTCGGAGTCTTCAAAAATGGCCGTGTA 59473 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGAT 451036 || ||||| || || |||||||| |||| || ||||| | || |||||| | | Sbjct 59474 GAGATTATTGCTAACGACCAAGGCAACCGAATCACGCCTTCGTACGTGGCTTTTACTGCT 59533 Query 451037 TCAG---AAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAA 451092 || || | || | || | |||||||| | | | | | | | | || || |||| Sbjct 59534 GAAGGTGAACGTCTGATCGGCGACGCTGCTAAGAACCA-GCTGACTACTAACCCCGAAAA 59592 Query 451093 CACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATA---CTGTACA 451149 |||||| | || || |||||| | || || || | ||| | | || | |||| || Sbjct 59593 CACAGTGTTCGACGCCAAACGTCTTATCGGACGC--GAATGGTCA-GAAAGCTCTGTGCA 59649 Query 451150 AAAAGAGAAAAAATTCTTTTCTTATGATGTAGT--AAATCAAAAAGGAAAGCCCTATATT 451207 | | || |||| ||| ||| | | || | ||| || ||| ||||| | ||| Sbjct 59650 ACATGATGTGAAATACTTCCCTTTTAAGGTGATCGAAAAGAACAAG--AAGCCTCACATT 59707 Query 451208 CAAGTAAATTATA---AAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 || || | |||| |||| | || || || ||||||||||| ||||| Sbjct 59708 CAGGTGCAGACCGGGCAAGGAGAAAAGGTA---TTCGCGCCCGAAGAAATTTCTGCTATG 59764 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || ||||| || || || || || |||| ||||| | || Sbjct 59765 GTTCTCACCAAGATGAAGGAGACTGCCGAGACCTACCTTGGCAAAAAGGTTACACACGCT 59824 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||| || ||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 59825 GTTGTTACTGTGCCTGCTTACTTCAATGATGCCCAGCGTCAGGCAACGAAAGATGCCGGA 59884 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || || || || || || | || || ||||| ||||| ||||| || || | || Sbjct 59885 ACCATCGCCGGATTGAACGTAATGCGCATCATTAACGAACCGACAGCGGCCGCCATTGCC 59944 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || ||||| | || | ||| | | |||||||||||| | || || ||||| || Sbjct 59945 TACGGACTCG----ATAAGAAGGA--CGGTGAAAAAAATATTCTTGTCTTCGATTTAGGC 59998 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 || || ||| |||| || | || | ||||| | || || || || ||| || Sbjct 59999 GGTGGTACTTTTGATGTGTCCCTGCTCACCATTGATAACGGTGTGTTCGAGGTAGTTTCA 60058 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||||| ||||| |||||||| |||||||| || Sbjct 60059 ACCAACGGTGACACTCATCTTGGAGGTGAGGA 60090 >seq11007 Length=18899 Score = 125 bits (138), Expect = 3e-23 Identities = 361/554 (65%), Gaps = 6/554 (1%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 || || || || || || || ||||| ||||| || ||||| |||||| | | ||| Sbjct 7216 AACCCGGACGAGGCCGTCGCTTATGGCGCTGCTGTGCAAGCTGCTATTTTGATGGGTGAC 7275 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | |||| | | |||| | || | | || || |||||| |||||||||| | Sbjct 7276 AAGTCTGAAGCAGTTCTAGATCTCCTACTGCTTGACGTGACACCTTTATCTCTTGGCATC 7335 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTT---GT 452167 || || || ||||| | |||||| | | ||||| || ||| |||| ||| || Sbjct 7336 GAGACTGCCGGTGGGGTTATGACTGTTCTTATTAAGCGTAACACTACTATCCCTACGCGT 7395 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 ||| ||| ||||||| ||| || ||||| || |||||| || || ||| Sbjct 7396 CAAAC---TCAGACATTTACTACTTACTCAGACAACCAGCCTGGTGTATTGATACAGGTG 7452 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCA 452287 | ||||||||| | || |||||| ||||| ||| || || | || ||| || Sbjct 7453 TATGAAGGAGAGAGAGCTATGACAAAGGATAACAATCTTCTCGGCAAGTTCGAACTTACA 7512 Query 452288 AACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCA 452347 |||| |||| || | || ||||||||||| | |||| ||| ||||||| Sbjct 7513 GGCATTTCTCCAGCACCTCGTGGCGTGCCTCAAATTGAGGTGACCTTTGACATTGATGCC 7572 Query 452348 AATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTACA 452407 || ||||| | ||||| ||| |||| || || | || || | | ||||| || Sbjct 7573 AACGGTATCTTAAATGTATCAGCAATTGATAAGTCCACAGGCAAGGAAAACAAAATCACG 7632 Query 452408 ATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCA 452467 || ||||| ||||| ||| | ||||| || || || ||| ||||| | || || Sbjct 7633 ATCACTAACGATAAGGGTCGTCTGTCTAAGGAGGACATCGAACGTATGGTCAAGGAGGCG 7692 Query 452468 GAAAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAACTA 452527 || | | ||| ||||| || || || | ||| | ||| ||||| ||| ||| Sbjct 7693 GAGCAGTACAAAGATGAAGACGACAAACAAAAAAAGAAAATTGCTGCTAAGAACGCACTT 7752 Query 452528 GAAGGATATTGTTA 452541 || || |||||||| Sbjct 7753 GAGGGTTATTGTTA 7766 Score = 109 bits (120), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 451220 AAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATG 451279 ||||| || ||||||| ||| || ||||| | || || ||||| | || || ||| Sbjct 6448 AAAGGCGACTCTAAAACGTTTTTCCCGGAAGAGGTCTCTTCGATGGTGTTGACGAAGATG 6507 Query 451280 AAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCC 451339 ||||||| || ||| ||| | || | | || | |||| || || || || || Sbjct 6508 AAAGAAATCGCTGAAGCTTATTTAGGCACCACTGTGTCACATGCCGTCATCACCGTGCCT 6567 Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || || ||||||||| | ||||| |||||||| || || || || ||||| || ||| Sbjct 6568 GCATACTTCAATGATTCGCAACGCCAAGCAACGAAGGACGCCGGCACCATTGCCGGCTTA 6627 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||||| || || || ||||| || || ||||||||||| Sbjct 6628 AATGTCCTCCGTATCATTAACGAGCCAACAGCAGCTGC 6665 >seq31781 Length=21204 Score = 87.8 bits (96), Expect = 7e-12 Identities = 160/234 (68%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 |||||||| || ||| | || |||| || | || | ||||| ||||| ||||| || Sbjct 19887 GATGCAGGCCAAATTTCAGGACTAAACGTGTTGCGTGTAATTAACGAACCAACAGCTGCC 19828 Query 451436 GCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 || ||||| ||||| | ||| || ||| || || ||| ||| || | | Sbjct 19827 GCACTAGCTTATGGCAT-GGATAA--------AACCGATGATAAAGTTATAGCTGTTTAT 19777 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555 ||| |||| || ||||| || | ||| ||||| ||| | | || ||||||||| Sbjct 19776 GATCTTGGGGGCGGAACATTCGACATTTCCATACTTGAGATTCAGAAGGGTGTATTTGAA 19717 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCA 451609 |||||| |||| ||||| ||||| ||| || || |||||| | || ||| || Sbjct 19716 GTAAAGTCAACAAATGGAGATACGTTTCTTGGTGGAGAAGATTTCGACAATACA 19663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974863701750512