Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq29777 95.1 1e-14 seq2599 86.0 7e-12 >seq29777 Length=19435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 279/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 ||||||||||| || || | || ||||| || ||||| |||||| | |||| ||| | Sbjct 14584 CCCGTACCGATGCCCTCAGCACCGTTCACCAGCACCATCGGTATGATCGGCAGATAATAA 14525 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGG- 168409 || || || ||| | || || | ||||||||| | |||||| || |||| Sbjct 14524 TCCGGCTCGATTTTCTGGTTGTCGTCGAAAAGGTAGTTGAGCACCGGGTCGTCG-GAGGC 14466 Query 168410 ATCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGA-GAAG 168468 | ||| | | || || | | | ||||||||||||||||| | ||| | || Sbjct 14465 AGGAAATAGACTTCGTGCTAACGGGCTCAACTTTGTGAAAATGTACCTGGG-TGACGCAG 14407 Query 168469 CATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGT 168528 ||||| |||||| || ||||| || || |||||| || | || ||||| |||| Sbjct 14406 AGTCCTTGCCACCCTGCAGCCGCGTGCCGAACTGACCAATGGGCTGTAGCAGGTTGATGT 14347 Query 168529 TGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACT--TC 168586 |||| ||| | ||| | |||| || || || |||| | | ||| || Sbjct 14346 TGTTGCTGCCCACGAAGTTCTGCGCCAGGTTGACGAT--TGTCATCATGAGCGACTGCTC 14289 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 ||| |||||||| || ||| | || ||||| | | |||| || |||||||||| ||| Sbjct 14288 ACCGTGGTGGTAGGCTGACATTTCGGCGACGGAACCGGCCAACTGCGCCACCTTCACTTC 14229 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 |||| || | | ||| || | ||| || || | |||| |||||||||||| Sbjct 14228 CCGCTTGTCGTTTCTCTTGAAACATGTGAACAGTACCTTACGCTGTCCAGGCTTGAGACC 14169 Query 168707 ATC 168709 || Sbjct 14168 GTC 14166 >seq2599 Length=48712 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | || ||||||||| || || |||| ||||||||| || | || | ||| || Sbjct 37035 GTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATT 36976 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||||| ||| || ||||||||||||||||| || || || || || || |||| Sbjct 36975 GCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTG 36919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589731798603360