Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5480 104 2e-17 >seq5480 Length=41483 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || || | | | || |||| || |||||||| || || || Sbjct 2541 TCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTGTTTACCCGCGAAG 2482 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| |||| | ||||||||||| ||||||| || || | Sbjct 2481 ATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTCGTCTTAACATTT 2422 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | |||||| |||| || |||||||| || ||||| || || || Sbjct 2421 TCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAGTGAGCGTTTTGACG 2362 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 2361 AAGATCTGCATA 2350 Score = 100 bits (110), Expect = 2e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||| |||||||||||||| ||| | || | || |||| || Sbjct 1482 GTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTG 1423 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || |||||||| || || | || || || | || | ||||||||||| || || Sbjct 1422 CTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTC-CTGGATTT 1364 Query 34898 CTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCC 34955 ||||| | || || || | ||| || ||| || |||| ||| || ||||| || Sbjct 1363 TTGTTT-TCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCG 1305 Query 34956 GTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||| ||||||||||| Sbjct 1304 GTGAGGGTCTTCACGAAGATCTGCAT 1279 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 |||||||||||||| ||||| ||||| || | || |||| |||||||||||||| Sbjct 2079 GTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCGACCATCTTCCAGCTGTTTTCCC 2020 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || ||||| || | || | ||||||||||| || || ||| Sbjct 2019 GCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTCCTTGTCTTGGATTTTAGTCTTG 1960 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 ||| | | |||| || | | || || || | || || || || || ||||| ||| Sbjct 1959 ACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGTGATTGTCTTGCCGGTGAGGGTC 1900 Query 34965 TTCACAAAGATCTGCATA 34982 || || || || |||||| Sbjct 1899 TTGACGAATATTTGCATA 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324500013679392