Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2599 282 5e-71 >seq2599 Length=48712 Score = 282 bits (312), Expect = 5e-71 Identities = 1016/1588 (64%), Gaps = 25/1588 (2%) Strand=Plus/Minus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||||| | | |||||||||||| || | | | || | ||||| || || ||||| Sbjct 37991 TTTGTCCTGT-CCACAGTAAACTGGATAGCTTGAGCTGCAGGCTTTGTGCGCAAGTAATA 37933 Query 47027 CATACCAGTCTTTAAACCTAAACTCC-ATCCATAGAAATGCATACTAGTTAATTTAGAAT 47085 ||| || ||||| | ||| || |||| | || || || ||||| || | |||| || Sbjct 37932 CATGCCTGTCTTGAGACC-AAGCTCCCAGCCGTAAAAGTGCATTGATGTCAGTTTACTAT 37874 Query 47086 AACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTAT 47145 || | | ||| | || |||| || | || || || || || ||||| ||||| | || Sbjct 37873 AATTTGTTTCAGCCATGTGAACGTTTAACGACTGGCTTTGGTCGATAAAAGCACCGCGAT 37814 Query 47146 CAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTT 47205 | |||||||| | | ||| | | || || |||||||| || || |||| | | Sbjct 37813 CGGCTGCCATCTTGATGATATTCTTCTGCGGGATCTCCCACACAGTGCGGTAAAGCAGCT 37754 Query 47206 TAATGTCTTCTGGGAGATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttt 47265 | | |||||||| | ||| ||||| | ||| || || | | | || ||| Sbjct 37753 TGAGATCTTCTGGAATATTGAGCTTTTGGACAGAACCGTTGTAGGCCACCAGTTCGTTAC 37694 Query 47266 ttaattcatttgac--caaagttttcgttcagttaatgtttttaaAAGATGAGGATTAAC 47323 | || || || || | | |||| || | ||| | | ||| | || || Sbjct 37693 GCA--TCGCTTCACTCCACAATCCCAGTTCTGTGAGATCTTTAAGCAAATGGTGGTTCAC 37636 Query 47324 AATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTAT 47383 | ||||| || || || | |||| || ||||| ||||||||| || | || || Sbjct 37635 TACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTACGCCTCAAT 37576 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||||||| |||| || || || || ||||| || ||||||| || | || | Sbjct 37575 GGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCCAATAGAAG 37516 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 || || | ||| || | || | || | | ||| ||||||||| Sbjct 37515 ACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCCCAAAGAGA 37456 Query 47504 TGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATT 47563 | || ||| ||| | |||||| || | || || ||| | || || ||| Sbjct 37455 AGTAGGGGTGACACCCCACATATCATACTGCAATATACCCTTAGAGACAGGCGAGCCAAC 37396 Query 47564 ATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATA 47623 |||||| | || | || | | | ||| |||||||| |||||||| || |||| || Sbjct 37395 ATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAACGCACCGTA 37336 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 || |||||||||||||| ||| |||| || | | ||||||| | || ||||| Sbjct 37335 GTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCGGGCTATCGAAAGGTAG 37276 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || | |||||| | ||||| || |||||||||||||| | |||| Sbjct 37275 ACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAATTGGACGATGACG 37216 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 ||| || | ||||||||| || | ||| || | | | | ||| |||||||| || || Sbjct 37215 TTTGTTGCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAATAATTTTGTTAAG 37156 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTAT 47863 | ||| ||||||| | || || | | | | Sbjct 37155 GTTTCGTGTCACAAGTTTCGTCACCTCTTTTAATTTTTGGAAGTCGTAATAACCCTCCTT 37096 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| ||| || |||| ||| || |||||||| || || | |||| ||| | Sbjct 37095 GACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATTTCATCGGGAGACGA 37036 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 || | || | ||| | ||||| |||| ||| || || || || | ||||| ||||| Sbjct 37035 GTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATT 36976 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | ||||||||| |||||||| |||||| | || || |||||||| ||||| Sbjct 36975 GCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCT 36916 Query 48044 TTCAATGATAGATTTCCAAACAGTCCTAGC------CTTTATAACAGCTCTAGCTTTATT 48097 |||| |||| | ||||| || ||| || | | | |||| || Sbjct 36915 ATCAAGAATAGCATACCAAAGTTTCTGAGCGGGCACCTGTCGTAAA----TAGCGGCCTT 36860 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCT-AACC 48156 ||| ||||||||| || ||||| ||||| || || || | || | || || | Sbjct 36859 C-CAT-TTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAG-CAGTCGCTTAAAC 36803 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 ||||||| || |||||||| | ||||||| |||| || |||||| ||||| Sbjct 36802 CAGGACACGAGTTGGGACACATAAGTGACCAACTGTCATTATCGGCGACTCTACGCATAA 36743 Query 48217 ATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 | | ||| || |||||||| || ||| || | ||| | | | ||||||| |||| Sbjct 36742 ACAGATCAGGAATCCAAAGTGC-ATAGAAGAGATCACGCGCACGATGTTCTTCGATGCCG 36684 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| || || || || || || | || || | |||||||| || | ||| || Sbjct 36683 GTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTCCAGATAAATA 36624 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | ||||||| | |||||| || || || || | ||| | ||||||||| || || Sbjct 36623 GCAAACGCACCTGGCCTTTTATTTCCCCCCTGGTCAACATACCGGGCAGTATTATTGTAT 36564 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 || | || ||| || || |||||||| || | ||||| || || | |||||| ||| Sbjct 36563 ACGCGTAGCATGGGTACGATACCATTCGAAGTTCCATTTGTACCAGCTATATAAGACCCA 36504 Query 48456 -CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 || || || ||| || ||| || || ||||| || |||||| || ||||| Sbjct 36503 GCTGGC-CTAATACAGTGTATGTTAATTCCAATGCCACCAGCAGATTTAGAGATGAGAGC 36445 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCT 48542 |||| | ||| ||||||||||||||| Sbjct 36444 ACACTGACGAAGCGTATCATAAATTCCT 36417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561871561980960