Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq18132 170 2e-36 seq11007 168 5e-36 seq23667 136 3e-26 seq18550 127 2e-23 seq5480 100 2e-15 seq25712 96.9 3e-14 seq19857 93.3 3e-13 >seq18132 Length=104847 Score = 170 bits (188), Expect = 2e-36 Identities = 368/547 (67%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 |||| || ||| | || || || || |||||||| || | |||||||| ||||| | Sbjct 84427 TAGGCATCGATCTCGGTACAACCTACTCGTGTGTTGGCGTCTTCCAAAATGGCAAAGTGG 84486 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 | || ||||| |||||||| || | || || ||||| || | ||||| || | Sbjct 84487 AGATCATTGCAAATGATCATGGCCTTCGGACCACCCCATCAGTAGTCGCCTTCACTGACA 84546 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATAC 550173 | |||| || | || ||| |||| || ||||| |||| ||| || | || || Sbjct 84547 CGGAACGCTTTATAGGGGATCCAGCCAAGGCGCAAGCATCACT--TAACCCGAAAAACAC 84604 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG---TTCAGGC 550230 ||||||||||||||| | | ||||| || | || || || | | |||| | Sbjct 84605 AATTTTTGATGCTAAAAGGCTGATTGGCAGGCGGTTC---GACTCTAGAGAAGTTCAAGA 84661 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 |||||||| ||||| ||| | | |||| | || || || | | ||| Sbjct 84662 CGATATGAAAACCTGGCCATTCGTTGTGATCAATGATAATGACAAGCCGAAAGTACAAGT 84721 Query 550291 TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 ||| | || | | ||| |||| | || ||| |||| ||| | ||||| | | Sbjct 84722 TACGTTTAAAAAAAACCTCAAAACATTTGCTCCTGAAGAAATATCAGCCATGGTCCTGAC 84781 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||||||||| | | |||| || ||||| | || || ||||||||||| || Sbjct 84782 TAAAATGAAAGATATAGCCGAAATTTACCTTGGTTCGAAGGTAACAGATGCAGTAATCAC 84841 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||||| || || ||||| |||||||| || |||||||| ||||||||||| ||| || Sbjct 84842 GGTACCCGCTTACTTTAACGACTCACAGCGGCAAGCTACGAAAGATGCTGGCTCTATAGC 84901 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||||| ||||| | ||||| || |||||||| ||||||||||| | ||||| || | Sbjct 84902 CGGACTGAATGTCTTGCGTATAATTAATGAACCAACTGCTGCTGCTATCGCATACGGTTT 84961 Query 550531 TGATAAA 550537 |||||| Sbjct 84962 AGATAAA 84968 >seq11007 Length=18899 Score = 168 bits (186), Expect = 5e-36 Identities = 474/719 (66%), Gaps = 18/719 (3%) Strand=Plus/Plus Query 551892 AAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGT 551951 || ||| | |||||||| | || || || ||| | || || | || | || ||| Sbjct 6898 AAGGCTTTACGTCGTCTTCGTACAGCCTGTGAACGTGCGAAGAGGACTTTATCTTCTTCA 6957 Query 551952 ACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATT 552011 ||||| || | ||||| | || || || ||||| || |||| | | || | | ||| Sbjct 6958 ACTCAGGCCTCAATTGAGATCGACTCGTTGTTTGACGGTGTTGACTTTTATTCAACGATT 7017 Query 552012 TCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTA 552071 | | || || ||||| |||| || || || || | ||| | |||||||| Sbjct 7018 ACTCGTGCTCGTTTCGAAGAGCTTTGCTCCGACCTTTTCCGTTCAACTCTAGAACCAGTT 7077 Query 552072 GAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTT 552131 ||| ||| |||| | ||| | ||||| || || || ||||| |||||||| ||| Sbjct 7078 GAAAAAGCTTTACGCGATGCCAAGATGGACAAGGTTGCTGTGCATGACATTGTGCTCGTT 7137 Query 552132 GGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTA 552189 |||||||| || | || || |||| | || | ||| || |||||||||| Sbjct 7138 GGTGGATCAACTCGTATCCCACGTATTCAGAAGTTGCTCCAAG--ATTTCTTCAATGGTA 7195 Query 552190 AAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 || || | ||| || |||| || || ||||| || || ||||| || || | |||| Sbjct 7196 AAGAACTTAATAAATCAATTAACCCGGACGAGGCCGTCGCTTATGGCGCTGCTGTGCAAG 7255 Query 552250 CAGCTATTCTTTCTG---GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATG 552306 | |||||| || || ||||| |||| | | | | || | |||| | || | Sbjct 7256 CTGCTATT-TTGATGGGTGACAA--GTCTGAAGCAGTTCTAGATCTCCTACTGCTTGACG 7312 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | || ||| |||||||||| | || || | || || |||||||| |||||| | Sbjct 7313 TGACACCTTTATCTCTTGGCATCGAGACTGCCGGTGGGGTTATGACTGTTCTTATTAAGC 7372 Query 552367 GAAATACTACTATTCCT---TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATC 552423 | || |||||||| ||| || ||| ||| |||| |||| || ||||| || | Sbjct 7373 GTAACACTACTATCCCTACGCGTCAAA---CTCAGACATTTACTACTTACTCAGACAACC 7429 Query 552424 AAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATC 552483 | ||| ||| || || | | ||||||||| ||| | || || ||||| |||| Sbjct 7430 AGCCTGGTGTATTGATACAGGTGTATGAAGGAGAGAGAGCTATGACAAAGGATAACAATC 7489 Query 552484 AACTTGG-TACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATT 552542 || || | || || ||| ||| ||| |||| || |||||||| || || |||||| Sbjct 7490 TTCTCGGCAAGTTCGAACTTA-CAGGCATTTCTCCAGCACCTCGTGGCGTGCCTCAAATT 7548 Query 552543 GAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 || || || || || || |||||||| || || || ||||| | || |||||| || Sbjct 7549 GAGGTGACCTTTGACATTGATGCCAACGGTATCTTAAATGTATCAGCAATTGATAAGTC 7607 >seq23667 Length=973 Score = 136 bits (150), Expect = 3e-26 Identities = 373/568 (66%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 ||||| || | |||||||||||||| || || | | ||| || ||| | | |||| Sbjct 870 TTTGAGGAGCTATGTTCTGATCTCTTCCGATCTACTTTGGCACCCGTTGAAAAGGCTTTA 811 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 | || | ||||| || ||| || | ||||| || || ||||||||||| || || Sbjct 810 CGGGACGCTAAGATGGACAAAAACACTATCCATGACATCGTCCTTGTTGGTGGCTCCACT 751 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 | || || | | | | || | || ||| |||||| || ||| || | || | Sbjct 750 CGGATACCGCGAGTACAAAAGCTGCTGCAGGACTT-TTTCAACGGAAAAGAACTTAACAA 692 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | |||| ||||||||||| |||||||| || || ||| | || ||||| ||| | | Sbjct 691 ATCAATTAACCCAGATGAGGCCGTTGCCTACGGAGCTGCAGTGCAGGCAGCAATTTTGAC 632 Query 552263 TGGACAAACTGATGAAA----AACTA--CAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 || |||| || | || || || | | || | |||||| | || || Sbjct 631 AGG------TGATCAATCGGGAGCTGTCCAGGATCTGCTGCTGCTTGATGTTGCCCCACT 578 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 ||| ||||| | || || | ||| || | ||||| |||||| | | ||||| || Sbjct 577 ATCACTTGGCATTGAGACCGCTGGTGGCGTGATGACATCGCTTATCAAACGTAATACCAC 518 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 || || ||| | | | ||| | ||||| ||||||||||| | || ||||| Sbjct 517 CATCCCAACCAAACAGACGCAAACATTCACCACGTACTCAGATAATCAGCCCGCCGTTAC 458 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 ||| ||| | || |||||||| | | || ||||| || |||| || || | || Sbjct 457 AATCCAAGTCTTCGAAGGAGAGCGTGCCATGACCAAAGACAACAATCTGCTAGGCAAATT 398 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | | || |||||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 397 CGACCTCACTGGAATTCCTCCGGCACCTCGAGGTGTACCTCAAATCGAAGTCACCTTCGA 338 Query 552557 TATCGATGCCAATGGAATTTTGAATGTG 552584 | ||||||||||| || | |||||| Sbjct 337 CGTGGATGCCAATGGCATCCTCAATGTG 310 >seq18550 Length=70165 Score = 127 bits (140), Expect = 2e-23 Identities = 371/568 (65%), Gaps = 14/568 (2%) Strand=Plus/Plus Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 ||||| || | ||||||||||| || || || | | ||| || ||| | | |||| Sbjct 104 TTTGAGGAGCTATGTTCTGATCTATTCCGATCTACTTTGGCACCCGTTGAAAAGGCTTTA 163 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 | || | ||||| || ||| || || ||||| || || |||||||| || || || Sbjct 164 CGGGACGCTAAGATGGACAAAAACACTGTCCATGACATCGTCCTTGTTGGCGGCTCCACT 223 Query 552144 AGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 | || || | | | | || | || ||| |||||| || || || | || | Sbjct 224 CGGATACCGCGAGTACAAAAGCTGCTGCAGGACTT-TTTCAACGGAAAGGAACTTAACAA 282 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 | |||| ||||||||||| |||||||| || || ||| | || ||||| ||| | | Sbjct 283 ATCAATTAACCCAGATGAGGCCGTTGCCTACGGAGCTGCAGTGCAGGCAGCAATTTTGAC 342 Query 552263 TGGACAAACTGATGAAA----AACTA--CAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 || |||| || | || || || | | || | |||||| | || || Sbjct 343 AGG------TGATCAATCGGGAGCTGTCCAGGATCTGCTGCTGCTTGATGTTGCCCCACT 396 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 ||| ||||| | || || | ||| || | ||||| |||||| | | ||||| || Sbjct 397 ATCACTTGGCATTGAGACCGCTGGTGGCGTGATGACATCGCTTATCAAACGTAATACCAC 456 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 || || ||| | | | ||| | ||||| ||||||||||| | || ||||| Sbjct 457 CATCCCAACCAAACAGACGCAAACATTCACCACGTACTCAGATAATCAGCCCGCCGTTAC 516 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 ||| ||| | || |||||||| | | || ||||| || |||| || || | || Sbjct 517 AATCCAAGTCTTCGAAGGAGAGCGTGCCATGACCAAAGACAACAATCTGCTAGGCAAATT 576 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | | || |||||||| || ||||| || ||||| ||||| ||||| || ||||| Sbjct 577 CGACCTCACTGGAATTCCTCCGGCACCTCGAGGTGTACCTCAAATCGAAGTCACCTTCGA 636 Query 552557 TATCGATGCCAATGGAATTTTGAATGTG 552584 | ||||||||||| || | |||||| Sbjct 637 CGTGGATGCCAATGGCATCCTCAATGTG 664 Score = 89.7 bits (98), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || ||||||||||| || || || ||| | || || || || || || Sbjct 6115 ATGGAAAAGTGGAGATTATTGCCAACGAGCAGGGCAACCGGACGACACCGTCGTACGTCG 6174 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 | ||||| | | |||| ||| || || || | || ||| |||| | | || | Sbjct 6175 CCTTCACCAACATCGAACGTTTGGTAGGAGACTCGGCCAAAAATCAGGTGGCGCTCAACC 6234 Query 550164 CTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG 550223 | ||||||| ||||||| || ||||| | || ||| | | || ||||| |||| | Sbjct 6235 CGTCCAATACGGTTTTTGACGCCAAACGGCTGATCGGACGGCGGTTCGATGATCCGACAG 6294 Query 550224 TTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATG 550265 | ||||| || || ||||| ||||| ||| | | || |||| Sbjct 6295 TGCAGGCCGACATCAAGCACTGGCCGTTCAAGGTGGTCAATG 6336 >seq5480 Length=41483 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315 ||||||||||| || || || || ||||| || |||||| || || ||| || || | Sbjct 1724 AGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTC-GCTGAGGGTGCG 1666 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || || ||||| ||||| || ||||| || | || ||||| || || || || || Sbjct 1665 ACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTC 1606 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 ||| ||||| || ||| ||| || ||||| || ||| || | ||||||||| Sbjct 1605 TTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGT 1546 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| || || || || || |||||||| ||||| Sbjct 1545 AATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 96.9 bits (106), Expect = 3e-14 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || || |||||||| ||| || || || ||||| | || || | Sbjct 1269 GAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAGAGGGTCCG 1210 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| |||||||| ||||||||||| | || |||||||| || || || || || Sbjct 1209 GCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGGATGCCCTC 1150 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGA 563433 ||| || || |||||| ||||| || || ||||| || | | || ||||| Sbjct 1149 TTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCG-AC-GTCGAGG 1092 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| | ||||| ||||| |||||||| Sbjct 1091 GTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCAT 1051 >seq25712 Length=344 Score = 96.9 bits (106), Expect = 3e-14 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || || ||||||||||| || || || ||||| || || || ||||| Sbjct 71 ATGGCAAAGTGGAGATCATTGCCAATGACCAGGGCAATAGAACAACGCCTTCGTATGTAG 130 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATC 550163 | ||||| || || |||| | | || |||||||| || |||| | | ||| | Sbjct 131 CATTCACAGATACGGAACGACTGATCGGAGATGCAGCGAAGAATCAGGTTGCCATTAACC 190 Query 550164 CTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTG 550223 || | ||||| ||||||| |||||| | | || ||| | | | | ||||| ||| | Sbjct 191 CTTCAAATACAGTTTTTGACGCTAAAAGGCTGATCGGACGTCGCTATGATGATCAGACGG 250 Query 550224 TTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATA 550283 | || ||||||||||| ||| | ||| | | |||| | ||||||||| | | Sbjct 251 TGCAAAGCGATATGAAGCACTGGTCGTTCAATGTCGTTAGCGAGGGTGGAAAACCCAAGA 310 Query 550284 TTGAAG 550289 || ||| Sbjct 311 TTCAAG 316 >seq19857 Length=467 Score = 93.3 bits (102), Expect = 3e-13 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 |||| | ||||| || || || ||||| ||||| || || || || || | || || || Sbjct 15 AGTTTCAGATGCTGTCATCACAGTACCGGCATACTTCAACGATTCTCAGAGACAGGCGAC 74 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||| || ||| || || || || || || ||||| || |||||||| || || || Sbjct 75 GAAAGACGCAGGAATAATCGCAGGTCTGAACGTACTTCGAATCATCAATGAGCCCACGGC 134 Query 550510 TGCTGCACTTGCATATGGACTTGATAAACATAATGATCA-AGAACTTAATGTACTCATCT 550568 || ||| |||| |||||||| || ||| | | | | ||| | ||| || ||||||| Sbjct 135 CGCGGCAATTGCTTATGGACTGGACAAAAA-AGGAAGCGGAGAGCGTAACGTTCTCATCT 193 Query 550569 TTGAT 550573 ||||| Sbjct 194 TTGAT 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027510407404360