Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5480 147 1e-29 seq11007 145 5e-29 seq18132 123 2e-22 seq25712 118 7e-21 >seq5480 Length=41483 Score = 147 bits (162), Expect = 1e-29 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||||||||||||||| || || ||||| ||||| || || |||||| || ||| || | Sbjct 1728 ACGAAGACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTC-GCTGAGGG 1670 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | || || |||||||||||||| ||||| ||||| |||||||| || || || | Sbjct 1669 TGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGC 1610 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 | || |||||||| |||||| ||| || |||||| || ||| || | ||| | Sbjct 1609 CCTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGA 1550 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| ||||| |||||||| ||||| |||||||| || Sbjct 1549 GAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCTG 1510 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| | ||||||||| ||||| || || |||||||| | || || || || || Sbjct 2104 ACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGT 2045 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| || || ||||| || ||||||||||| || ||||| || ||||| || Sbjct 2044 GCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACC 1985 Query 480671 TTCCTTGTCTTGAATCTTTTGT-TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 ||||||||||| || ||| || ||||| |||||| || || | || || | Sbjct 1984 CTCCTTGTCTTGGAT-TTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCA 1926 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| ||||| ||||| Sbjct 1925 ATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTG 1886 Score = 98.7 bits (108), Expect = 6e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || || ||||| || ||| || | ||||| || | || || Sbjct 1499 CGAAGACGGAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTG 1440 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || || | |||||| || ||||| || || | |||||||||||||| || || Sbjct 1439 CGCCCGTCCTCCAATTGCTTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCC 1380 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG--TGAAGTTTCAA 480729 |||||||| || || ||| ||| ||| || || || |||| | | || | || | Sbjct 1379 TCCTTGTCCTGGATTTTTGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACG--TCGA 1322 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| ||||| |||||||| ||||| ||||| || || Sbjct 1321 GGGTAATCGTTTTGCCGGTGAGGGTCTTCACGAAGATCTG 1282 >seq11007 Length=18899 Score = 145 bits (160), Expect = 5e-29 Identities = 557/860 (65%), Gaps = 26/860 (3%) Strand=Plus/Plus Query 475338 TCGAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTGAAG 475397 |||| ||||| ||||| || | | | ||||| || || | ||| | || || || | Sbjct 6761 TCGAGGATGGCATTTTCGAGGTGAAATCGACAGCAGGTGACACTCATTTAGGAGGAGAGG 6820 Query 475398 ATTTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATAA--- 475452 |||| ||||| | | || ||||| ||| |||| ||||| |||||| |||| Sbjct 6821 ATTTCGATAACCGCATGGTTAATCATTTCGTGC--AAGAATTCAAAAGGAAACATAAGAA 6878 Query 475453 --AGTTGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGT 475510 | |||| ||| |||| || || ||| | |||||| | || || ||||||||| Sbjct 6879 GGATTTGA-CTTCAAACAAG----AAGGCTTTACGTCGTCTTCGTACAGCCTGTGAACGT 6933 Query 475511 GCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGAA 475570 || ||| | || | |||||| | ||||| | | |||| | || || | ||||| Sbjct 6934 GCGAAGAGGACTTTATCTTCTTCAACTCAGGCCTCAATTGAGATCGACTCGTTGTTTGAC 6993 Query 475571 GGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTC 475630 || |||| | | || | ||||| | ||| || ||||| |||| || || || Sbjct 6994 GGTGTTGACTTTTATTCAACGATTACTCGTGCTCGTTTCGAAGAGCTTTGCTCCGACCTT 7053 Query 475631 TTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAATCA 475690 || | ||| | ||||| |||||| ||| | | | ||| | || | ||||| Sbjct 7054 TTCCGTTCAACTCTAGAACCAGTTGAAAAAGCTTTACGCGATGCCAAGATGGACAAGGTT 7113 Query 475691 CAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATG 475750 || ||||| ||||| || || || || ||||| | || ||| || |||| | Sbjct 7114 GCTGTGCATGACATTGTGCTCGTTGGTGGATCAACTCGTATCCCACGTAT-TCAGAAGTT 7172 Query 475751 CTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGT 475809 | || || | || ||||||||| | | ||| || | || || || || || || Sbjct 7173 GCTCCAAGATTTCTTCAATGGTAAAGAACTTAATAAATCAATTAACCCGGACGAGGCCGT 7232 Query 475810 TGCATATGGAGCTGCTGTCCAAGCAGCTATTTT-ATCAG-GTCAA-TCAGACGAGAAACT 475866 || ||||| |||||||| ||||| |||||||| || | | ||| || || | || Sbjct 7233 CGCTTATGGCGCTGCTGTGCAAGCTGCTATTTTGATGGGTGACAAGTCTGAAGCAGTTCT 7292 Query 475867 AAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGG 475926 | || | |||| ||||||| || || | || | || | || || | || || Sbjct 7293 A---GATCTCCTACTGCTTGACGTGACACCTTTATCTCTTGGCATCGAGACTGCCGGTGG 7349 Query 475927 GATTATGACTAATCTTATTGACAGAAATACTCCTATCCC-ATGC-AAAAAATCAAAAGTA 475984 | |||||||| ||||||| | | || ||| ||||||| | || ||| ||| | | Sbjct 7350 GGTTATGACTGTTCTTATTAAGCGTAACACTACTATCCCTACGCGTCAAACTCAGA--CA 7407 Query 475985 TTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGA 476044 ||| | ||||| || || || || | |||| || || | | |||||| || ||| Sbjct 7408 TTTACTACTTACTCAGACAACCAGCCTGGTGTATTGATACAGGTGTATGAAGGAGAGAGA 7467 Query 476045 AAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCT 476104 | || || ||||| || || || | || | ||| ||| ||| |||| || Sbjct 7468 GCTATGACAAAGGATAACAATCTTCTCGGCAAGTTCGAACTTACAGGCATTTCTCCAGCA 7527 Query 476105 CCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAAT 476164 || | || || ||||||||||| || || ||||| |||||||| || ||||| | ||| Sbjct 7528 CCTCGTGGCGTGCCTCAAATTGAGGTGACCTTTGACATTGATGCCAACGGTATCTTAAAT 7587 Query 476165 GTTACTGCTTGTGATAAATC 476184 || | || |||||| || Sbjct 7588 GTATCAGCAATTGATAAGTC 7607 Score = 107 bits (118), Expect = 1e-17 Identities = 220/322 (68%), Gaps = 10/322 (3%) Strand=Plus/Plus Query 474560 GTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATAT 474619 ||||| ||||||||| || ||| | ||| | || | || | ||| || || || | Sbjct 6373 GTCCAGTCTGATATGAAACACTGGACATTTGACGTAGTGAACGATGGGGGCAAGCCGAAA 6432 Query 474620 AT--AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAA 474677 || || | | | || ||| || ||||| |||| |||||| | | ||||| | Sbjct 6433 ATCAAGGTGGACTTCAA--AGGCGACTCTAAAACGTTTTTCCCGGAAGAGGTCTCTTCGA 6490 Query 474678 TGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAA-GTAACTG 474734 |||| || | || |||||| ||| ||| |||| || || | || | || | Sbjct 6491 TGGTGTTGACGAAGATGAAAGAAATCGCTGAAGCTTAT---TTAGGCACCACTGTGTCAC 6547 Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || ||||| || |||||||| ||||| |||||||| || || | Sbjct 6548 ATGCCGTCATCACCGTGCCTGCATACTTCAATGATTCGCAACGCCAAGCAACGAAGGACG 6607 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| || | ||||| | ||||| ||||| || ||||||||||| || Sbjct 6608 CCGGCACCATTGCCGGCTTAAATGTCCTCCGTATCATTAACGAGCCAACAGCAGCTGCCA 6667 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| || || ||||| || || Sbjct 6668 TTGCCTACGGCCTTGACAAAAA 6689 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 |||||||| || ||| |||| || || ||| ||| |||| || | || |||| || Sbjct 4776 GCAATTGGCATCGATCTAGGTACAACCTACTCTTGCGTAGGAGTATTTCAGCATGGCAAG 4835 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||||||||||||||| ||||| || |||| || || |||||||| | || ||| Sbjct 4836 GTAGAAATAATTGCCAATGATCAAGGAAACCGAACGACGCCGTCATATGTCGCGTTCACT 4895 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || | || ||||| ||||| || || Sbjct 4896 GAGACGGAGCGACTCATTGGCGATGCCGCCAA 4927 >seq18132 Length=104847 Score = 123 bits (136), Expect = 2e-22 Identities = 357/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||| | || || || ||| ||||| | || | |||||||| ||||| || Sbjct 84429 GGCATCGATCTCGGTACAACCTACTCGTGTGTTGGCGTCTTCCAAAATGGCAAAGTGGAG 84488 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||| ||||| || || | | || || |||||| || | || ||||| || Sbjct 84489 ATCATTGCAAATGATCATGGCCTTCGGACCACCCCATCAGTAGTCGCCTTCACTGACACG 84548 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| |||| || ||| | || || ||||| || ||| || || || ||| Sbjct 84549 GAACGCTTTATAGGGGATCCAGCCAAGGCGCAAGCATCACTTAACCCGAAAAACACAATT 84608 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||||||||| ||||||| | || || || || ||| |||||| Sbjct 84609 TTTGATGCTAAAAGGCTGATTGGCAGGCGGTTCGACTCTAGAGAAGTTCAAGACGATATG 84668 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATACAC 474634 ||||| || ||||| |||| | || || || | || ||| ||| Sbjct 84669 AAAACCTGGCCATTCGTTGTGATCAATGATAATGACAAGCCGAAAGTACAAGT--TACGT 84726 Query 474635 GCAGGTGAAACT--AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 | |||| ||| |||| | || ||| |||| || | ||||| | | |||| Sbjct 84727 TTAAAAAAAACCTCAAAACATTTGCTCCTGAAGAAATATCAGCCATGGTCCTGACTAAAA 84786 Query 474693 TGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTT 474751 ||||| | | || || | || ||||| | ||||| ||||||||||| || || Sbjct 84787 TGAAAGATATAGCCGAAATT-TACCTTGGTTCGAAGGTAACAGATGCAGTAATCACGGTA 84845 Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 || || || ||||| || || || || ||||| || |||||||| || || || || Sbjct 84846 CCCGCTTACTTTAACGACTCACAGCGGCAAGCTACGAAAGATGCTGGCTCTATAGCCGGA 84905 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGAT 474871 || ||||| || ||||| |||||||||||||| || || || | || || ||| | ||| Sbjct 84906 CTGAATGTCTTGCGTATAATTAATGAACCAACTGCTGCTGCTATCGCATACGGTTTAGAT 84965 Query 474872 AAGAA 474876 || || Sbjct 84966 AAAAA 84970 >seq25712 Length=344 Score = 118 bits (130), Expect = 7e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||| || || |||||||||||||| || ||||||||||| || || ||||| Sbjct 71 ATGGCAAAGTGGAGATCATTGCCAATGACCAGGGCAATAGAACAACGCCTTCGTATGTAG 130 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || || || || |||| || || |||||||| || || |||| | ||| ||| | Sbjct 131 CATTCACAGATACGGAACGACTGATCGGAGATGCAGCGAAGAATCAGGTTGCCATTAACC 190 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 || ||||| ||||||| |||||||| |||| || ||| | ||||||| || | Sbjct 191 CTTCAAATACAGTTTTTGACGCTAAAAGGCTGATCGGACGTCGCTATGATGATCAGACGG 250 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC 474615 | ||| |||||| || ||| | || || || | | | ||||| ||||| Sbjct 251 TGCAAAGCGATATGAAGCACTGGTCGTTCAATGTCGTTAGCGAGGGTGGAAAACC 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266730898217072