Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq29777 95.1 1e-14 seq2599 82.4 9e-11 >seq29777 Length=19435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 279/423 (66%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 14363 GATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAAG 14422 || |||||||||||| |||| | || || ||| | || ||| | | || |||| Sbjct 14166 GACGGTCTCAAGCCTGGACAGCGTAAGGTACTGTTCACATGTTTCAAGAGAAACGACAAG 14225 Query 14423 GATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCAT 14482 ||| |||||||||| || |||| | | ||||| || | ||| || |||||||| Sbjct 14226 CGGGAAGTGAAGGTGGCGCAGTTGGCCGGTTCCGTCGCCGAAATGTCAGCCTACCACCAC 14285 Query 14483 GGTGA--AGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAA 14540 ||||| ||| | | |||| || || || |||| | ||| | ||| | Sbjct 14286 GGTGAGCAGTCGCTCATGATGACA--ATCGTCAACCTGGCGCAGAACTTCGTGGGCAGCA 14343 Query 14541 ACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGG 14600 ||||||| ||||| || | || |||||| || || ||||| || |||||| |||| Sbjct 14344 ACAACATCAACCTGCTACAGCCCATTGGTCAGTTCGGCACGCGGCTGCAGGGTGGCAAGG 14403 Query 14601 ATGCTTC-TCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTT 14659 | || | ||| | ||||||||||||||||| | | | | || || | | ||| Sbjct 14404 ACTCTGCGTCA-CCCAGGTACATTTTCACAAAGTTGAGCCCGTTAGCACGAAGTCTATTT 14462 Query 14660 GAT-CCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACC 14718 | |||| || |||||| | ||||||||| | ||| || | || || || Sbjct 14463 CCTGCCTC-CGACGACCCGGTGCTCAACTACCTTTTCGACGACAACCAGAAAATCGAGCC 14521 Query 14719 AGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTAC 14778 || | ||| |||| | |||| ||||| || ||||| || | ||||| |||||||| Sbjct 14522 GGATTATTATCTGCCGATCATACCGATGGTGCTGGTGAACGGTGCTGAGGGCATCGGTAC 14581 Query 14779 GGG 14781 ||| Sbjct 14582 GGG 14584 >seq2599 Length=48712 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | |||||||| | |||| || ||||| || || |||||||| ||||||| Sbjct 36896 TTTGGTATGCTATTCTTGATAGCCAGATTGAAACTGGCACCCCGTATATGCTCTACAAGG 36955 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 |||| |||||| ||||| || ||| | || | ||||| || ||| | || ||| | | Sbjct 36956 ATGCATGTAACCGTAAGAGCAATCAACAAAACGTTGGAACGATTAAGTGTTCTAATTTAT 37015 Query 75996 GCACGGAAATTTTAGAGTAC 76015 | || ||| || | |||||| Sbjct 37016 GTACAGAAGTTATTGAGTAC 37035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596317817800320