Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5480 113 7e-20 >seq5480 Length=41483 Score = 113 bits (124), Expect = 7e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| |||||||| || || ||||| | || ||||||| Sbjct 1048 AAAATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGC 1107 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || |||||| || | ||||| || || ||||| ||||| || || || Sbjct 1108 TCGGATACGATCGAAAACGTAAAGACAAAAATCCAGGACAAAGAGGGCATCCCGCCGGAT 1167 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || ||||||| |||||| || || || ||||| | | || | ||||||||| Sbjct 1168 CAGCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTAT 1227 Query 156000 AATAT 156004 || || Sbjct 1228 AACAT 1232 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||| ||||| || || ||| | || || || || Sbjct 2579 ATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTCA 2638 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || || || |||||||| || ||||| || || || || Sbjct 2639 GACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCAG 2698 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || ||||||||||||||| | | || | ||||| || || Sbjct 2699 CAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAAC 2758 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| |||| || || Sbjct 2759 AT-TCAAAAGGAGTCGACCCTGCA 2781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731563113422400