Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq5480 104 4e-17 >seq5480 Length=41483 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||||||||| | | || |||| || | |||||| || |||||||| || ||| Sbjct 1232 ATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTC 1173 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || || ||||| || || ||||| | ||||| || || ||| Sbjct 1172 TGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTA 1113 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || || || ||||| || || ||||| || ||||| | ||| || ||| Sbjct 1112 TCCGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGC 1053 Query 172068 Atttt 172072 ||||| Sbjct 1052 ATTTT 1048 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGAT-CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 ||||||||| || | | | | | || |||| |||| ||| || ||||| ||||| | | Sbjct 1689 AATATTATAGTC-GCTGAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAAAATGAGAC 1631 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 |||||| || ||||| || || ||||| ||||| || || |||| || || || | Sbjct 1630 GCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTTTTCAATCG 1571 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 | || | || ||||| |||||||||||||| || || | || || | ||| |||| Sbjct 1570 TGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCACGAAAATCT 1511 Query 172066 GCAt 172069 |||| Sbjct 1510 GCAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904753987351200