Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5667 123 7e-23 seq2599 98.7 3e-15 >seq5667 Length=16049 Score = 123 bits (136), Expect = 7e-23 Identities = 179/248 (72%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| |||||| | |||||||||||||||||| ||| || || ||||| || || Sbjct 3717 TTCCATAGCCTTGATGAGACGACGCTGAATATAACCGGTTTCAGCAGTCTTTACGGCCGT 3776 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 ||| || ||||| | | || |||||||| || ||||| | ||| ||| ||| || | Sbjct 3777 ATCGATGAGACCCTCTCTTCCTCCCATAGCGTGAAAGAAAAACTCCGACGG-CGTGAGTC 3835 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGAATCGTCGAACTTGGT 302750 | | | | | || |||| ||||| || |||| |||||| |||| ||| ||| | Sbjct 3836 CAGCGAGATATGAATTCTCGACGAAGCCTCGCGACTCGGGTCCGAA--GTCATCTTTGAT 3893 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || ||||| || || || |||| | || || |||||||| ||||||||||| Sbjct 3894 GAAATGCGGCAGCGTTCTCTTGCGGAAGCCAAACGGAATCCGCTTTCCTTCAACGTTCTG 3953 Query 302811 CTGTCCCA 302818 ||| |||| Sbjct 3954 CTGACCCA 3961 >seq2599 Length=48712 Score = 98.7 bits (108), Expect = 3e-15 Identities = 368/571 (64%), Gaps = 7/571 (1%) Strand=Plus/Minus Query 155655 TTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTG 155714 ||||||| ||| || || || | || | || || |||| |||||| ||||||||| Sbjct 37010 TTAGAACACTTAATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTG 36951 Query 155715 TATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCA 155774 || || || || ||||| || || || ||||| || ||||| ||| || | Sbjct 36950 TAGAGCATATACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCAAAGTTTC 36891 Query 155775 CGGGCATTAATTTGCTTGTTG-TATCTGCCTTCCGACTCATATTTCATATACAGCGTTCG 155833 | || | || | || || | ||||||| || ||||| |||| | | Sbjct 36890 TGAGCGGGCACCTG-TCGTAAATAGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTC 36832 Query 155834 GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 | || || || | || || || | ||||| ||| | ||| || | || ||||| Sbjct 36831 AAACTCTTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCA 36772 Query 155894 AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAG 155953 | | | |||| || || | |||||| | |||| ||||| |||||||| || Sbjct 36771 ACTGTCATTATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGCATAGAAGAG 36712 Query 155954 GTCCCTTGC-CTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012 || | || | || || || |||| ||| || || || || | |||||| || Sbjct 36711 ATCACGCGCACGATGT-TCTTCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAA 36653 Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC---TCTTGCCACCCT 156069 | || || |||||||||||| |||||||| ||| || | || || |||| Sbjct 36652 TGTCTCCGTGCCATGGCTCCAGATAAATAGCAAACGCACCTGGCCTTTTATTTCCCCCCT 36593 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 | || |||||||| ||||| |||||| | || | |||||| || | |||||||| |||| Sbjct 36592 GGTCAACATACCGGGCAGTATTATTGTATACGCGTAGCATGGGTACGATACCATTCGAAG 36533 Query 156130 TGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAA 156189 | ||||| || || |||| || |||| || | || | || || | | ||||| Sbjct 36532 TTCCATTTGTACCAGCTATATAAGACCCAGCTGGCCTAATACAGTGTATGTTAATTCCAA 36473 Query 156190 TACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | ||||| | ||||||| || |||| || Sbjct 36472 TGCCACCAGCAGATTTAGAGATGAGAGCACA 36442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471180889866468