Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq19961 104 3e-16 seq17630 102 1e-15 seq2303 102 1e-15 seq26001 95.1 1e-13 seq22060 89.7 6e-12 seq5667 89.7 6e-12 >seq19961 Length=25414 Score = 104 bits (114), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || || ||||| ||| | ||||| || ||| ||| ||||| | ||| | Sbjct 14559 TATGCATGCCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCGGGTAGGAGTC 14500 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 |||| ||||| | ||| ||||| | | |||| || ||| |||||||||||||||| Sbjct 14499 CGCGTTTCTTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATGCCCTCGACGG 14440 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 | || || ||| || |||||| | ||||| | | | || || |||||| | Sbjct 14439 CCGCGAACGCGACGACGCGCTCGCCGTAGGTGGC---GTCGTCGTTCCCGATCCAGGCAA 14383 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 |||||||||||||| || | | | |||| ||| ||||||||| |||||||||| Sbjct 14382 GGGCCCAGTCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAGAGGTGGT 14323 Query 869412 C 869412 | Sbjct 14322 C 14322 >seq17630 Length=3584 Score = 102 bits (112), Expect = 1e-15 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1254375 ACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGG 1254434 ||||| ||||| | ||| || | | ||| || | ||||| |||| | |||||| Sbjct 400 ACGGCCGTCTGAACCTCCCGAGAGGTGATGGTTGACCTTTTGTTGTAGTGGGATAGACGG 341 Query 1254435 CCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATC 1254494 |||||| | | |||| | |||| |||||||| || ||||| ||||||| ||||| Sbjct 340 GAGGCCTCAGCGGCGATTCTCTCGAAGATGTCGTTTACGAACGAATTCATGATTGACATG 281 Query 1254495 GACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 | ||| || || || ||||||||| |||||||||||||||||||||||| Sbjct 280 GCCTTCGATGAAATACCAGTGTCGGGGTGGACCTGCTTGAGCACCTTGTAGATG 227 >seq2303 Length=85521 Score = 102 bits (112), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | | || | ||||||||||||| || || | | || || Sbjct 56603 GCCAGTTCACCGGGTAGCAGTAGTCTGACGGCGGTCTGGACTTCACGTGAGGTTATAGTC 56662 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||| | || |||| |||||||| ||||| | |||| || |||| |||||| Sbjct 56663 GATCGCCTATTGTAGTGAGCCAGACGCGAAGCCTCAGCAGCGATCCGTTCGAATATGTCG 56722 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || ||||| |||||||||| |||||| | ||| || || ||| ||||| |||||| Sbjct 56723 TTTACAAAGGAGTTCATGATCGACATAGCCTTCGACGAAATACCCGTATCGGGATGCACC 56782 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||| | |||||||| |||||| Sbjct 56783 TGCCTAAGCACCTTATAGATG 56803 >seq26001 Length=1457 Score = 95.1 bits (104), Expect = 1e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 |||||| |||||| | | | || || |||| || ||||| || ||||||||||| | Sbjct 1087 AGACGGGAGGCCTCAGCGGCAATTCGCTCGAAGATATCGTTTACGAACGAGTTCATAATT 1028 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||| || ||||||||| |||||||||||||||||||||||| Sbjct 1027 GACATGGCCTTCGATGAGATACCAGTGTCGGGGTGGACCTGCTTGAGCACCTTGTAGATG 968 >seq22060 Length=60276 Score = 89.7 bits (98), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 733185 ACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATG 733244 |||||||| || | |||||||| || |||||||| |||||||||||||| ||| | | Sbjct 12742 ACGCCCGATATTATCATCAACCCACATGCCATCCCTTCGCGCATGACCATCGGCCATCTT 12801 Query 733245 CTCGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCC 733304 ||||| ||| | ||||| ||||||| | ||||| | |||||||||| ||||| Sbjct 12802 ATCGAGTGCCTGCAAGGCAAAGTGGCCTCGAACAAGGGCGAAATCGGCGACGCGACGCCG 12861 Query 733305 TT 733306 || Sbjct 12862 TT 12863 >seq5667 Length=16049 Score = 89.7 bits (98), Expect = 6e-12 Identities = 193/281 (69%), Gaps = 16/281 (6%) Strand=Plus/Minus Query 507598 GGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCA 507657 ||| ||||||||| ||| |||||| | | || | ||||| |||||| ||||||| Sbjct 4989 GGTTGAGCGCCACGTGCAGAACGGCGACATCATCGTTTTCAACCGCCAGCCGACGCTGCA 4930 Query 507658 CA---TGGGCTCCATGCTCATGCACAAGGTG-GTGCCCATGCCCGGGCGCACCATGCGAT 507713 || || | ||| | || ||| | | | || ||||| || || | || Sbjct 4929 CAAAATGAGTATGATGGGC---CATAAGATCCGCGTCC-TGCCCTGGTCGACATTTCGGA 4874 Query 507714 TCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGC 507773 | ||||| |||| ||| | |||||||||||||| |||||||| ||||||||| ||| Sbjct 4873 TGAACCTCTCCGTGACGACGCCGTACAACGCCGACTTCGACGGCGATGAGATGAACATGC 4814 Query 507774 ACGTGCCCCAGTC-CGAGACGGCGCGCGCCGAG---GTGACGCACACCATGAGCGTGTCG 507829 |||| || ||||| | || | ||||||| ||| | | || ||||| ||| || Sbjct 4813 ACGTTCCGCAGTCACTTGA-GACGCGCGCTGAGATCGAGCAGCTGGCCATG---GTGCCG 4758 Query 507830 CTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 | ||| | | |||| ||||||||||||||| |||| || Sbjct 4757 CGGCAGATCATCACGCCACAGGCCAACAAGCCCGTCATGGG 4717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104368368043188