Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5480 143 2e-29 seq2599 140 3e-28 >seq5480 Length=41483 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | |||||||| || || ||||| ||||||||||| || || | | | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| |||||||| || || || || || || ||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || |||||||| |||||| | | | |||| ||||| ||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| | ||| | || ||||| Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTGCTTCGACTCCGTGGAGG 2577 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| ||||| ||||| ||||| || || || | Sbjct 1278 GATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACGATTACCCTCGACGTCGAGCCCTC 1337 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| | || || | ||||||||| ||||| ||||| || || || ||||| |||| Sbjct 1338 TGACACAATCGAGAATGTGAAAACAAAA-ATCCAGGACAAGGAGGGCATCCCTCCTGATC 1396 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 |||| | ||||||||||||| || || ||||||| | | | | | || || |||| Sbjct 1397 AACAGAGGCTGATCTTTGCCGGCAAGCAATTGGAGGACGGGCGCACCCTCTCGGACTATA 1456 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || |||||||| || || ||| | || | || | |||||||| Sbjct 1457 ACATCCAGAAGGAATCCACTCTTCACCTCGTCCTCCGTCTTCGCGGAGG 1505 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | |||||| | || || || || ||||| ||||| || |||| | | Sbjct 1051 ATGCAAATCTTCGTCAAAACGTTGACTGGGAAGACGATTACCCTCGACGTCGAAGGCTCG 1110 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| ||||| |||||| ||||| |||||||| || || || || ||||| Sbjct 1111 GATACGATCGAAAACGTAAAGACAAAA-ATCCAGGACAAAGAGGGCATCCCGCCGGATCA 1169 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||| |||||||| ||||| || || || | | | | ||||||||||| Sbjct 1170 GCAGAGGTTGATTTTTGCCGGCAAACAACTAGAAGACGGCCGGACCCTCTCAGATTATAA 1229 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || ||| | || | || | |||||||| Sbjct 1230 CATCCAGAAGGAATCCACCCTTCACCTCGTCCTCCGTCTCCGCGGAGG 1277 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || ||||| ||||| ||||| |||||||| || ||| Sbjct 1506 GATGCAGATTTTCGTGAAGACCCTCACCGGCAAAACCATTACTCTCGAAGTCGAGCCCAG 1565 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || ||| |||||||||||||||||| || || || |||||||| Sbjct 1566 TGACACGATTGAAAACGTGAAAACAAAGATCCAAGACAAAGAGGGCATCCCACCCGATCA 1625 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| | || || || || || || |||||||| | | | | || ||||| Sbjct 1626 ACAGCGTCTCATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTCAGCGACTATAA 1685 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||| ||||| ||| |||| Sbjct 1686 TATTCAGAAGGAAAGCACACTCCACCTGGT 1715 Score = 122 bits (134), Expect = 8e-23 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | |||||||| ||||| || || || || || || || || | | Sbjct 2578 GATGCAAATTTTTGTGAAAACGCTGACCGGAAAGACGATCACACTGGAGGTGGAGCCGTC 2637 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | |||| || || ||||| ||||| || || || || || ||||| || Sbjct 2638 AGACACAATCGAAAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCCGACCA 2697 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || ||||| || ||| | | | | ||||| || || Sbjct 2698 GCAGAGGTTGATCTTCGCGGGCAAGCAGCTCGAAGATGGCCGCACCCTTTCAGACTACAA 2757 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 |||||||||||| ||||| || ||| | ||| | || |||||||| Sbjct 2758 CATTCAAAAGGAGTCGACCCTGCACCTTGTGCTTCGTTTGCGCGG 2802 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/228 (70%), Gaps = 13/228 (6%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||| || |||| || || || ||||||||||| || | Sbjct 2997 ATGCAAATTTTTGTGGAAACACTCACCGCAAAGACCATCACGCTCGAAGTGGAGTTGTCT 3056 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | ||| || || | ||| || || || || || || || | || ||||| Sbjct 3057 GACACCATCGAA-CGTCAAGGCTAAA-ATTCAGGATAAGGAGGGCATTTCCCCTGATCAG 3114 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| |||||||| ||||| || ||| || ||| || Sbjct 3115 CAGCGTCTGATCTTCGCCGGAAAACAGCTCGAGGA--CGG-----ATG-CACTTTACAAT 3166 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||| ||||| || ||| |||| || || |||||||||||| Sbjct 3167 ATTCA---GGAGTCGACCCTCCACCTGGTCTTTCGTTTGCGCGGAGGC 3211 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || || || | || || ||| | || Sbjct 1883 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACAATCACATTGGAGGTGGAACCGGCC 1942 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || || ||| ||||||||||| || || || || |||||||| Sbjct 1943 GACACGATTGAAAACGTCAAGACTAAA-ATCCAAGACAAGGAGGGTATTCCCCCCGATCA 2001 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | || || || || ||||||||||| ||| Sbjct 2002 GCAGCGTCTTATTTTCGCGGGAAAACAGCTGGAAGAT 2038 >seq2599 Length=48712 Score = 140 bits (154), Expect = 3e-28 Identities = 371/557 (67%), Gaps = 15/557 (3%) Strand=Plus/Minus Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAATTTCGGCACA 139142 ||||| | || || || || | ||| ||||| | || ||| || | || ||| | ||| Sbjct 37073 GAGGCAAGATTACAGACTGCAATTTCATCGGGAGACGA-GTACTCAATAACTTCTGTACA 37015 Query 139143 CAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATC 139202 |||||| |||||| ||||| || | |||||||||||||| || |||||||| ||||| Sbjct 37014 TAAATTAGAACACTTAATCGTTCCAACGTTTTGTTGATTGCTCTTACGGTTACATGCATC 36955 Query 139203 TTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACA 139261 ||||| ||||||||||| ||||||||||| | || | || | ||| | || | | Sbjct 36954 CTTGTAGAGCATATACGGGGTGCCAGTTTCAATCTGGCTATCAAGAATAGCATACCA--A 36897 Query 139262 AGTCCCT-AGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGT 139320 ||| || ||| | | || || | || | | || ||||| |||||||| | Sbjct 36896 AGTTTCTGAGCGGGCACCTGTCGTAAATAGCGGCCTTCCATTTCGTATTTTTCGTACAAC 36837 Query 139321 TCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGC 139380 | ||| || ||| || || ||| | | | ||||| || |||||||| || Sbjct 36836 TTGTCAAACTCTTCTCCCCAGCAGTCGCTTAAACCAGGACACGAGTTGGGACACATAAGT 36777 Query 139381 GACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAAC 139440 ||||| | | || | ||| | | ||| |||||||| |||||||| | || | Sbjct 36776 GACCAACTGTCATTATCGGCGACTCTACGCATAAACAGATCAGGAATCCAAAGTGCATAG 36717 Query 139441 AGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTT---CATGTTAAGGAAA 139497 | | ||| ||||| | |||| ||| || | || ||| || || ||||| Sbjct 36716 AAGAGATCACGCGCACGATGTTCTT-CGATGCC--GGTATTTTTTCGCAGGTCGAGGAAT 36660 Query 139498 TCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT---TTG 139554 || |||| ||| |||||||||| |||||||| || || | || ||| || | || Sbjct 36659 TCGAAAATGTCTCCGTGCCATGGCTCCAGATAAATAGCAAACGCACCTGGCCTTTTATTT 36600 Query 139555 CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 || || || || || | || ||| ||||||| ||||||| | ||| || | | ||| Sbjct 36599 CCCCCCTGGTCAACATACCGGGCAGTATTATTGTATACGCGTAGCATGGGTACGATACCA 36540 Query 139615 CTCGCTGTTCCGTTGGT 139631 ||| ||||| || || Sbjct 36539 TTCGAAGTTCCATTTGT 36523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449707720717920