Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5374 143 2e-29 seq5480 89.7 4e-13 >seq5374 Length=31672 Score = 143 bits (158), Expect = 2e-29 Identities = 281/409 (69%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 34202 CCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGT--AGCGTGCCGTG 34259 |||||||||| ||||| ||||| ||||| |||||||| ||| | | | || | | Sbjct 27081 CCGGCGGGTTCTTCAGAATGAACGTGTTCAGCTTATGGTT--AGTCTCCAAC-TGACCAG 27025 Query 34260 A-TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCT 34318 | || |||||||||||||| || ||| || ||| | | ||| | | Sbjct 27024 AGTAGCCGCATGCTTTGCACGCCGTTGTGATGATCGCACGTTTCGGGAGCACAGTTAAGA 26965 Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 ||||||| || ||||| || || ||| | || |||| || || || || || | Sbjct 26964 CAGTCTCGGGATTGTCGCACGACGAACATAGAACGTACTTCTTAATAAAGCCGTCGAGGA 26905 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 |||||| || || | |||||| || || || ||| | || || || ||| | | Sbjct 26904 TGTCCTGCAATTTGTTAGCGTCGTGCTGCCCATTTACAATGTAACGATCTTTCTTGGAGT 26845 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | || || |||| ||||| ||||| || || ||||| || || || | | ||| | Sbjct 26844 CAAATTGGGTCTGCGAACCCAGTTCGCATCCAAAATACTTGGTGGGATATGTCGGCGGGC 26785 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | || || ||||| || || || |||||||||||| ||||||||||| |||||||| | Sbjct 26784 GGCCGAGTGCCTTCGCAATGTCACTCATGTTGACGATCACAGTCTTGATTCCGTTGCCTT 26725 Query 34559 TTCCTTCGACCTTGGCG--CAGATGCGCGGCATTTTGTAGCGGTAGAAC 34605 | || || ||||||||| ||| | | |||||||||| ||||||||| Sbjct 26724 TGCCCTCTACCTTGGCGATCAGCTTGG--GCATTTTGTAACGGTAGAAC 26678 >seq5480 Length=41483 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||| | || |||||||||||||| |||| ||||| | Sbjct 2351 ATGCAGATCTTCGTCAAAACGCTCACTGGCAAAACCATTACGCTCGAGGTTGAGCCAAGC 2410 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||||| ||||| || ||| | || || ||| Sbjct 2411 GACACCATTGAAAATGTTAAGACGAAGATTCAAGACAAGGAGGGCATTCCGCCTGACCAA 2470 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | |||||||||||||| ||||||| | || || | ||||||||| Sbjct 2471 CAGCGTCTCATCTTCGCGGGTAAACAGCTCGAGGATGGTCGCACCTTGTCTGATTACAAC 2530 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || | || ||||| | |||| || || || Sbjct 2531 ATTCAGAAGGAGTCAACCCTCCATCTGGTGCTTCGACTCCGTGGAGG 2577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412671716197652