Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq17630 138 2e-26 seq26001 120 5e-21 seq2303 120 5e-21 seq19961 111 2e-18 seq5667 105 1e-16 seq22060 86.0 1e-10 >seq17630 Length=3584 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| || ||||||||| ||||||| || || | | Sbjct 471 TGTACTTGGTGACAGCCTTGGTACCCTCAGAAACGGCGTGCTTGGCCAGCTCACCAGGGA 412 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| ||||| | ||| || | | ||| || | ||||| | Sbjct 411 GCAGAAGCCTGACGGCCGTCTGAACCTCCCGAGAGGTGATGGTTGACCTTTTGTTGTAGT 352 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | || ||| |||||| | | |||| | |||| |||||||| || ||||| |||| Sbjct 351 GGGATAGACGGGAGGCCTCAGCGGCGATTCTCTCGAAGATGTCGTTTACGAACGAATTCA 292 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | || || || || ||||||||| ||||||||||||||||||| Sbjct 291 TGATTGACATGGCCTTCGATGAAATACCAGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 232 Query 1485710 A 1485710 | Sbjct 231 A 231 >seq26001 Length=1457 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| ||||| || || ||||||||| ||||||| || || | | Sbjct 1212 TGTACTTGGTGACAGCCTTAGTACCTTCAGACACGGCGTGCTTGGCCAGCTCACCAGGGA 1153 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||| ||||| | || || | | ||| || | ||||| Sbjct 1152 GCAGAAGCCTGACGGCCGTCTGAACTTCCCGAGAGGTGATGGTTGACCTTTTGTTGTAAT 1093 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | || ||| |||||| | | | || || |||| || ||||| || |||||||||| Sbjct 1092 GGGATAGACGGGAGGCCTCAGCGGCAATTCGCTCGAAGATATCGTTTACGAACGAGTTCA 1033 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| | || ||||| || ||||||||| ||||||||||||||||||| Sbjct 1032 TAATTGACATGGCCTTCGATGAGATACCAGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 973 Query 1485710 A 1485710 | Sbjct 972 A 972 >seq2303 Length=85521 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || |||||||| || ||||| || ||||| |||||| | |||||||| ||| | | Sbjct 56559 TGTATTTAGTGACGGCTTTAGTACCTTCCGAGACAGCGTGCTTTGCCAGTTCACCGGGTA 56618 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||||| || || | | || || ||| | || | Sbjct 56619 GCAGTAGTCTGACGGCGGTCTGGACTTCACGTGAGGTTATAGTCGATCGCCTATTGTAGT 56678 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||| | |||| || |||| |||||||| ||||| ||||||| Sbjct 56679 GAGCCAGACGCGAAGCCTCAGCAGCGATCCGTTCGAATATGTCGTTTACAAAGGAGTTCA 56738 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| | || || || ||| ||||| ||||||||| | |||||||| | Sbjct 56739 TGATCGACATAGCCTTCGACGAAATACCCGTATCGGGATGCACCTGCCTAAGCACCTTAT 56798 Query 1485710 A 1485710 | Sbjct 56799 A 56799 Score = 118 bits (130), Expect = 2e-20 Identities = 173/243 (71%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| || || ||||| || || || ||| | ||||| || || | | Sbjct 52578 TGTACTTGGTGACGGCTTTAGTGCCCTCGGAAACTGCATGCTTCGCCAGCTCTCCAGGGA 52637 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | |||||| ||||||| ||||| | | ||||| | |||||| | | Sbjct 52638 GCAGCAGCCTCACGGCCGTCTGGACTTCGCGTGAGGTAATCGTCGATCTCTTGTTGTAAT 52697 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||| | ||| | ||||||| | |||| || |||| |||||||| ||||| ||||| Sbjct 52698 GCGAGAGTCGCGAC--GCCTCGGCGGCGATCCGTTCGAAGATGTCGTTCACAAATGAGTT 52755 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| | || || ||||| ||| || || ||||| || || || || Sbjct 52756 CATGATGGACATGGCCTTTGACGAAATGCCGGTGTCCGGATGGACCTGTTTCAGAACTTT 52815 Query 1485708 GTA 1485710 ||| Sbjct 52816 GTA 52818 >seq19961 Length=25414 Score = 111 bits (122), Expect = 2e-18 Identities = 221/327 (68%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || ||||| ||| | ||||| || || ||| ||||| | ||| ||||| ||| Sbjct 14551 CCCTCATCGCGTGAGATGAGCTCGTTACTGTAGGTGAGCCCGGGTAGGAGTCCGCGTTTC 14492 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||| | |||| || ||| ||||||||||||||||| || || Sbjct 14491 TTCATCCAGAAGATCGAGGCGAAAGCTCCGCTGAAGAAGATGCCCTCGACGGCCGCGAAC 14432 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||||| |||||| | | ||| | | | || || |||||| | ||||| Sbjct 14431 GCGACGACGCGCTCGCCGTAGGTGGC---GTCGTCGTTCCCGATCCAGGCAAGGGCCCAG 14375 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | | | |||| ||| ||||||||| ||||||||||| ||| Sbjct 14374 TCGGCCTTCTTTTTGATGCATGGCATCGTCTCGATGGCGTTGAAGAGGTGGTCGCGCTCC 14315 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 || || ||| |||||||| || | ||| || || | || || || ||||| || Sbjct 14314 TGGGGATCGGTGATGTAGGTGTTGAGTAAGAGAGAATACATTTCCGAATGAATGTTCTCC 14255 Query 794641 ATGGCGATCTGGAAGCCATAAAAGCAG 794667 || |||||| || || || |||||| Sbjct 14254 ATCATGATCTGAAACCCGTAGAAGCAG 14228 >seq5667 Length=16049 Score = 105 bits (116), Expect = 1e-16 Identities = 204/293 (70%), Gaps = 16/293 (5%) Strand=Plus/Minus Query 429528 GTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC 429587 || ||||||||| ||| | ||||||| | | || | ||||| |||||| |||| ||| Sbjct 4988 GTTGAGCGCCACGTGCAGAACGGCGACATCATCGTTTTCAACCGCCAGCCGACGCTGCAC 4929 Query 429588 ATGGGGTCGATGCTCAACCACAAGGTG-GTGCCCATGCCC-GGTCGCACCTTCCGGCTCA 429645 | | ||| | ||| ||| | | | || ||||| ||||| || || ||| | | Sbjct 4928 AAAATGAGTATGATGGGCCATAAGATCCGCGTCC-TGCCCTGGTCG-ACATTTCGGATGA 4871 Query 429646 ACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACG 429705 |||| |||||||| | |||||||||||||| |||||||| ||||||||| |||||| Sbjct 4870 ACCTCTCCGTGACGACGCCGTACAACGCCGACTTCGACGGCGATGAGATGAACATGCACG 4811 Query 429706 TGCCCCAGTC---GGAGATGGCACGCGCCGAAGTCGCCCA---CACCATGGGCGTGGCCC 429759 | || ||||| |||| | ||||| || ||| || ||||| ||| | | Sbjct 4810 TTCCGCAGTCACTTGAGA---CGCGCGCTGAGATCGAGCAGCTGGCCATG---GTGCCGC 4757 Query 429760 TCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGAC 429812 || | | |||| ||||||||||||||| |||| || ||||| |||| Sbjct 4756 GGCAGATCATCACGCCACAGGCCAACAAGCCCGTCATGGGTATCGTGCAGGAC 4704 >seq22060 Length=60276 Score = 86.0 bits (94), Expect = 1e-10 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 653750 ACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATG 653809 |||||||| || |||||||||| || |||||||| |||||||||||||| ||| | | Sbjct 12742 ACGCCCGATATTATCATCAACCCACATGCCATCCCTTCGCGCATGACCATCGGCCATCTT 12801 Query 653810 ATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCG 653869 || ||| ||| | ||||| ||||||| | ||||| | | ||||||| || ||| Sbjct 12802 ATCGAGTGCCTGCAAGGCAAAGTGGCCTCGAACAAGGGCGAAATCGGCGACGCGACGCCG 12861 Query 653870 TT 653871 || Sbjct 12862 TT 12863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912654769322396