Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5480 140 2e-28 >seq5480 Length=41483 Score = 140 bits (154), Expect = 2e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | ||||| |||||||| || || ||||||||||| | Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || ||||||||||| ||| | ||||| || |||||||||||||| Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || |||||||| || || |||| | || || || ||| || Sbjct 1157 ATGCCCTCTTTGTCCTG-GATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGAC 1099 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || || ||||| || ||||| || || || |||||||| Sbjct 1098 GTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATTTT 1048 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| ||| || || || || || |||||||| ||||| | | ||||||| | Sbjct 2565 CGAAGCACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCA 2506 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| ||||| || || | || | | || || || |||||||| ||||| ||| Sbjct 2505 TCCTCGAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTG 2446 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| ||| || || || ||| |||| | ||||| | || || || || || || Sbjct 2445 TCTTG-AATCTTCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAAT 2387 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | ||||| || || |||||||| Sbjct 2386 GGTTTTGCCAGTGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 |||||| || |||| ||| |||||| |||||| || ||||| || || | ||||| Sbjct 2101 CAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCG 2042 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 | ||| || || ||||| || || | || | | |||||||| || ||||||||||| Sbjct 2041 ACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTC 1982 Query 29688 TTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAG 29746 |||||||| ||||| || ||||| |||| | ||||| | |||| || || | | Sbjct 1981 CTTGTCTTG-GATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATG 1923 Query 29747 TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || | ||| || || ||||| ||||| Sbjct 1922 TGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29568 CAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCG 29627 |||||| ||||| | || || || || || ||||||||||| || || | || |||||| Sbjct 2797 CAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCG 2738 Query 29628 AGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTC 29687 ||| ||||| || ||||| || | ||||| || ||||| || ||||| || ||||| Sbjct 2737 GCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTC 2678 Query 29688 TTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAG 29746 || ||||| ||| || | || || |||| | ||||| || | || || || || | Sbjct 2677 CTTATCTTG-AATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTG 2619 Query 29747 TTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || | ||||| ||||| || ||||| Sbjct 2618 TGATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||| || || ||| ||| || ||||| ||||| || | ||||||| Sbjct 1722 ACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACC 1663 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| || ||||| | || | | || ||||| || || || |||||||| Sbjct 1662 GTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTT 1603 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || |||| | |||||| | || ||||| ||||| || Sbjct 1602 GTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAAT 1543 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || | ||| || || || |||||||| Sbjct 1542 GGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385060682780724