Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5480 132 9e-26 >seq5480 Length=41483 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || ||||| ||||| || |||||||| || Sbjct 1277 CCTCCGCGGAGACGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTATAATCTGAG 1218 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||||||||||||||||| || ||||| || | || || ||||| || || Sbjct 1217 AGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAAATCAACCTCTGCTGATCCGGCGGG 1158 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || || || || |||| ||||| ||||| |||||||| ||| || Sbjct 1157 ATGCCCTCTTTGTCCTGGATTTTTGTCTTTACGTTTTCGATCGTATCCGAGCCTTCGACG 1098 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 || | || |||||||| || |||||||| || || || || |||||| || Sbjct 1097 TCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGACGAAGATTTGCATTTTT 1047 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || ||| ||||| |||||||| || || | | ||| Sbjct 1722 ACGGAGTACCAGGTGGAGTGTGCTTTCCTTCTGAATATTATAGTCGCTGAGGGTGCGACC 1663 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || ||||| |||||||| || || || | |||||||| || || || || || || Sbjct 1662 GTCCTCCAGTTGCTTTCCAGCGAAAATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTT 1603 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||||| ||| || ||||||||||| ||| | || || ||||| | ||| || Sbjct 1602 GTCTTGGATCTTTGTTTTCACGTTTTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAAT 1543 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | ||||| || || |||||||| Sbjct 1542 GGTTTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1507 Score = 116 bits (128), Expect = 7e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 |||||| || || | |||||| || || || || || || || || || || || | | Sbjct 2797 CAAACGAAGCACAAGGTGCAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCG 2738 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 || ||||| || || || || || ||||| | || || || || || || || || || Sbjct 2737 GCCATCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTC 2678 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||||||||||||| || || || ||||| || || || || || || |||| || Sbjct 2677 CTTATCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGT 2618 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || |||| ||| || ||||| || ||||| Sbjct 2617 GATCGTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 |||||| || || | || || || ||||||||| || || || || || | | Sbjct 2101 CAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAGTGTGCG 2042 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| ||||| || |||||||| || || || || | || ||||| || || || || || Sbjct 2041 ACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAATACCCTC 1982 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||| ||||| || || | || || ||||||||||| || ||||| || ||||| || Sbjct 1981 CTTGTCTTGGATTTTAGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCTCCAATGT 1922 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| || | ||||| || ||||| ||||| Sbjct 1921 GATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 1883 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || |||||||| | | | ||| || || || ||| Sbjct 2553 TGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTCGAGCTGT 2494 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || ||||| || | ||||| || || || || || ||||| ||||||||||| Sbjct 2493 TTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCTTC 2434 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || | || || || || | || || || ||||| || Sbjct 2433 GTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAGTG 2374 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || || || |||||||| Sbjct 2373 AGCGTTTTGACGAAGATCTGCAT 2351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981402460325996