Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq27404 111 2e-19 seq25055 109 7e-19 seq24182 109 7e-19 seq11963 109 7e-19 seq10923 109 7e-19 seq7979 107 3e-18 seq25540 105 9e-18 >seq27404 Length=75800 Score = 111 bits (122), Expect = 2e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 69511 ATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 69452 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 69451 TCCCCGACGGGGAG 69438 Score = 104 bits (114), Expect = 3e-17 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11723 AACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781 ||| || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||| Sbjct 69516 AACGCATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGT 69457 Query 11782 TCGATTCCCCGACGAGGAG 11800 |||||||||||||| |||| Sbjct 69456 TCGATTCCCCGACGGGGAG 69438 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||| Sbjct 69436 AACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 69495 Query 139411 TATACTAACGAGGA 139424 |||||||||||||| Sbjct 69496 TATACTAACGAGGA 69509 >seq25055 Length=46323 Score = 109 bits (120), Expect = 7e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 3226 TTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 3167 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 3166 CCCCGACGGGGAG 3154 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3225 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3166 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 3165 CCCGACGGGGAG 3154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 3154 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3213 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 3214 TACTAACGAGGA 3225 >seq24182 Length=11470 Score = 109 bits (120), Expect = 7e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 7239 TTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 7298 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 7299 CCCCGACGGGGAG 7311 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7240 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7299 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 7300 CCCGACGGGGAGG 7312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 7311 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 7252 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7251 TACTAACGAGGA 7240 >seq11963 Length=27246 Score = 109 bits (120), Expect = 7e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 17705 TTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 17764 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 17765 CCCCGACGGGGAG 17777 Score = 109 bits (120), Expect = 7e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 17860 TTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 17919 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 17920 CCCCGACGGGGAG 17932 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 17706 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 17765 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 17766 CCCGACGGGGAG 17777 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 17861 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 17920 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 17921 CCCGACGGGGAG 17932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 17777 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17718 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 17717 TACTAACGAGGA 17706 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 17932 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17873 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 17872 TACTAACGAGGA 17861 >seq10923 Length=28924 Score = 109 bits (120), Expect = 7e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 20585 TTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 20526 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 20525 CCCCGACGGGGAG 20513 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 20584 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 20525 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 20524 CCCGACGGGGAG 20513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 20513 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 20572 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 20573 TACTAACGAGGA 20584 >seq7979 Length=12407 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 9582 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9641 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 9642 CCCGACGGGGAG 9653 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 9581 GTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 9640 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 9641 CCCCGACGGGGAG 9653 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||| Sbjct 9655 AACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 9596 Query 139411 TATACTAACGAGGA 139424 |||||||||||||| Sbjct 9595 TATACTAACGAGGA 9582 >seq25540 Length=47658 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 29989 TTCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 30048 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 30049 CCCCGACGGGGAG 30061 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 29990 TCCTCGTTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30049 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 30050 CCCGACGGGGAG 30061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 30061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 30002 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 30001 TACTAACGAGGA 29990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652569266852160