Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5480 132 5e-26 seq2599 87.8 2e-12 >seq5480 Length=41483 Score = 132 bits (146), Expect = 5e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 || ||||| ||||| || |||| | ||| ||| |||||| || ||||| || ||| | Sbjct 1697 TCCTTCTGAATATTATAGTCGCTGAGGGTGCGACC-GTCCTCCAGTTGCTTTCCAGCGAA 1639 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 |||||| ||||| || ||||| |||||||| || ||||| ||||||| || | | Sbjct 1638 AATGAGACGCTGTTGATCGGGTGGGATGCCCTCTTTGTCTTGGATCTTTGTTTTCACGTT 1579 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| |||||| ||||||| || |||| || | |||||||||||| || || || || Sbjct 1578 TTCAATCGTGTCACTGGGCTCGACTTCGAGAGTAATGGTTTTGCCGGTGAGGGTCTTCAC 1519 Query 133649 GAAAATCTGCAT 133660 |||||||||||| Sbjct 1518 GAAAATCTGCAT 1507 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || |||||||| || ||| ||| | |||||||||| Sbjct 2554 ATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCA-TCCTCGAGCT 2496 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || |||||| | ||||| ||||| ||||| || || ||||| |||||||| |||| Sbjct 2495 GTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTGAATCT 2436 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | ||||| || |||| || | ||||||||| | Sbjct 2435 TCGTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTTTGCCAG 2376 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 2375 TGAGCGTTTTGACGAAGATCTGCAT 2351 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || || || || | ||| | |||||| | |||||||| Sbjct 1475 GTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTGCTTGCCG 1416 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||| || || ||||||||||| |||||||| ||| ||| || Sbjct 1415 GCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTTTGTTTTC 1356 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | |||||| ||||||| ||| | ||||||||||| || || Sbjct 1355 ACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGTGAGGGTC 1296 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1295 TTCACGAAGATCTGCAT 1279 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||||||||||||| | || | || |||||||||||| |||||||| ||||| Sbjct 2733 TCTTCGAGCTGCTTGCCCGCGAAGATCAACCTCTGCTGGTCGGGCGGGATGCCCTCCTTA 2674 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | || | ||||| | |||||||| || | |||| Sbjct 2673 TCTTGAATCTTGGCCTTAACGTTTTCGATTGTGTCTGACGGCTCCACCTCCAGTGTGATC 2614 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || |||||||| ||||| || ||||| ||||| Sbjct 2613 GTCTTTCCGGTCAGCGTTTTCACAAAAATTTGCAT 2579 >seq2599 Length=48712 Score = 87.8 bits (96), Expect = 2e-12 Identities = 637/1019 (63%), Gaps = 18/1019 (2%) Strand=Plus/Minus Query 148257 TGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAAC 148316 || ||||| |||||||||||||| | | ||| || || ||| || || || || || Sbjct 37643 TGGTTCACTACCTGAAACTCGCCTGACAACACTCGGCGAGCATATACATTACTTGTGTAC 37584 Query 148317 GGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCT 148376 | |||| || || || ||||| | ||||| ||||||| ||||||||||||| || Sbjct 37583 GCCTCAATGGATTCATTATTGCCAAGTATCTGTGCGGTCGATGCCGTGGGCATGGGAGCC 37524 Query 148377 ACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCC 148436 | || || ||| || | ||| | | | ||||| || || || |||||||| Sbjct 37523 AATAGAAGACTGTTCCGTACGCCGTGTTGTGCAATTTTCACTTTAAGTGCGTCCCAGTCC 37464 Query 148437 CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGG 148495 || || | | || || || |||||| || ||||||| || || | || | || Sbjct 37463 CAAAGAGAAGTAGGGGTGACACCCCACATATCATACTGCAATATACC-CTTAGAGACAGG 37405 Query 148496 GCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAG 148555 ||| | || | ||| | || | || | || ||||| ||||| || || | Sbjct 37404 CGAGCCAACATATGTCTCGTATGTGCCTTCAACCTCAGCTAGTTCACAGCTTGCTTCTAA 37345 Query 148556 CGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG---CAGCGCCGCCGACTCGCT 148612 ||| ||||||||||| || || || | |||| || || || ||| ||| Sbjct 37344 CGCACCGTAGTAAATTGTTTCAAATATCTTTTTGTTAAGTTCCATTGCTTCCG---GGCT 37288 Query 148613 TTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAAT 148672 ||| | || | ||||| | ||| || || ||||| || |||||||| | ||||| Sbjct 37287 ATCGAAAGGTAGACGCATTATGATAAAAGCATCTGCAAGACCTTGTACGCCAATACCAAT 37228 Query 148673 GGGCCGGTGTTTAATGTTGGAGAGGCGC-GCGCTCTCGAGCGGATAGTGGTTGCGGTCGA 148731 || || || |||| | | || | || | || || || | | | || | Sbjct 37227 TGGACGATGACGTTTGTT-GCCACGCTCAGCTTCCGGGACTGGGTAATAGGTAACATCAA 37169 Query 148732 TGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCGCAGCAATTCAAAATCG 148790 | || |||| ||| || || ||| | || || | ||| | || || ||| Sbjct 37168 TAATTTTGTTAAGGTTTCGTGTCACAAGTTTCGTCACCTCT-TTTAATTTTTGGAAGTCG 37110 Query 148791 TACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTC 148850 || | | || || | || || | || | |||||| ||||| || || || | Sbjct 37109 TAATAACCCTCCTTGACAAACCGATTGAGCGCTAGAGAGGCAAGATTACAGACTGCAATT 37050 Query 148851 TCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCC 148910 ||||| || | |||||| | | || | || | ||| || || ||| || Sbjct 37049 TCATCGGGAGACGAGTACTCAATAACTTCTGTACATAAATTAGAACACTTAATCGTTCCA 36990 Query 148911 ACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCA 148970 ||||| | |||||||||||| | ||| || || |||||||| ||||| ||||| |||| Sbjct 36989 ACGTTTTGTTGATTGCTCTTACGGTTACATGCATCCTTGTAGAGCATATACGGGGTGCCA 36930 Query 148971 GTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGC 149027 ||||| | ||| | || | || ||| | || | ||| ||| |||| || | Sbjct 36929 GTTTCAATCTGGCTATCAAGAATAGCATACCAA---AGTTTCTGAGCGGGCACCTGTCGT 36873 Query 149028 TCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAA 149087 ||||| || ||| |||||| |||| | || ||| | || || |||| Sbjct 36872 AAATAGCGGCCTTCCATTTCGTATTTTTCGTACAACTTGTCAAACTCTTCTCCCCAGCAG 36813 Query 149088 TCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACG 149147 ||| | ||| || ||| || || ||||| || ||||| | | | || || Sbjct 36812 TCGCTTAAACCAGGACACGAGTTGGGACACATAAGTGACCAACTGTCATTATCGGCGACT 36753 Query 149148 CGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCT 149207 | |||||||||||| || | ||| || || || | ||| || ||||| ||| Sbjct 36752 CTACGCATAAACAGATCAGGAATCCAAAGTGCATAGAAGAGATCACGCGCACGATGTTCT 36693 Query 149208 TCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTC 149266 ||| ||| | || ||||||| ||| | ||| ||||| ||||||| ||||| Sbjct 36692 TCGATGCCGGTATTTTTTCGCAGGTCGAGGAATTCGAAAATGTCTCCGTGCCATGGCTC 36634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483216772251360