Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tropilaelaps_20mercedesae_20[genbank_20GCA_5F002081605.1_202017-04- 06] 33,764 sequences; 352,534,912 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5480 105 4e-18 >seq5480 Length=41483 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| || || ||| || || ||||||||||| || | ||||| | || || Sbjct 2560 CACCAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGACAAGGTGCGACCATCCTC 2501 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||| || || || || | |||||| || || |||| | || || ||||| Sbjct 2500 GAGCTGTTTACCCGCGAAGATGAGACGCTGTTGGTCAGGCGGAATGCCCTCCTTGTCTTG 2441 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| ||| || | ||||| ||| ||||||||||| || || || | ||| || |||| Sbjct 2440 AATCTTC-GTCTTAACATTTTCAATGGTGTCGCTTGGCTCAACCTCGAGCGTAATGGTTT 2382 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | |||||| || |||||||||||| Sbjct 2381 TGCCAGTGAGCGTTTTGACGAAGATCTGCATA 2350 Score = 100 bits (110), Expect = 2e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 33525 ACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAG 33584 ||| | |||||| | |||| ||| || ||||| ||||| || |||||||| ||| || Sbjct 2107 ACCACGCAAACGGAGTACCAGATGGAGCGTGCTTTCTTTCTGGATGTTGTAGTCGTTCAG 2048 Query 33585 TGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCAC 33644 |||||| | || |||| |||||||| || ||||| | |||||||||||| | || | Sbjct 2047 TGTGCGACCATCTTCCAGCTGTTTTCCCGCGAAAATAAGACGCTGCTGATCGGGGGGAAT 1988 Query 33645 ACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGT 33703 ||| || ||||| ||||| || | || | || | |||||| | |||||| | Sbjct 1987 ACCCTCCTTGTCTTGGATTTT-AGTCTTGACGTTTTCAATCGTGTCGGCCGGTTCCACCT 1929 Query 33704 CAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | | ||||| || || || || | || || || || || |||||| Sbjct 1928 CCAATGTGATTGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCATA 1882 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||| ||||| ||||| || || |||| || | |||||| ||||||||| Sbjct 1241 TCCTTCTGGATGTTATAATCTGAGAGGGTCCGGCCGTCTTCTAGTTGTTTGCCGGCAAAA 1182 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||||||||| |||| | || |||||||| ||||| ||| | || | Sbjct 1181 ATCAACCTCTGCTGATCCGGCGGGATGCCCTCTTTGTCCTGGATTTT-TGTCTTTACGTT 1123 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || ||| ||||| | || ||||| || || || |||||||| || Sbjct 1122 TTCGATCGTATCCGAGCCTTCGACGTCGAGGGTAATCGTCTTCCCAGTCAACGTTTTGAC 1063 Query 33738 AAAGATCTGCAT 33749 ||||| ||||| Sbjct 1062 GAAGATTTGCAT 1051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| || || || ||||| || || ||||| ||||| |||| |||||||| Sbjct 1481 TGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAGAGGGTGCGCCCGTCCTCCAATTGC 1422 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| |||| | ||| ||||| | || | || || ||||| ||||| Sbjct 1421 TTGCCGGCAAAGATCAGCCTCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGGATTTT- 1363 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||||| |||| || | ||||| | || ||||| | || |||||||| || || Sbjct 1362 TGTTTTCACATTCTCGATTGTGTCAGAGGGCTCGACGTCGAGGGTAATCGTTTTGCCGGT 1303 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 1302 GAGGGTCTTCACGAAGATCTGCAT 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328568738714880